Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq7050 376 5e-102 seq6284 338 1e-90 seq6090 302 1e-79 seq14093 268 2e-69 seq8932 251 2e-64 seq12171 147 5e-33 seq7337 95.1 3e-17 seq1924 87.8 4e-15 seq5578 86.0 1e-14 seq8923 84.2 5e-14 seq14277 73.4 8e-11 >seq7050 Length=3442 Score = 376 bits (416), Expect = 5e-102 Identities = 304/362 (84%), Gaps = 7/362 (2%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || ||||||||||||||| | ||||||||||||||| || |||||||||||||||| Sbjct 3319 TAACCGGCATCTTCACCGATACTACAATTTCACCGAGATCATGGTTGAGACAGTGCCCAG 3260 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3259 ATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 3200 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGC-TCTA 178 |||||||||||||||||||||||||||||||||| |||| | |||||| ||| | |||| Sbjct 3199 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTTAAGAGCTTCGAATTACTTCTA 3140 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || ||||||||||||||||||||||||| ||||| |||||||||| |||||||| Sbjct 3139 ACCCCCTTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATCTTGCGA 3080 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 || ||||| |||||||||||| ||||||||||| ||||||| || ||| || ||| | Sbjct 3079 TTTTGCAGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTTACTGAGG-CTGAC 3021 Query 299 AT---AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 || | || || || ||||||| ||||||| || |||||||| | ||||||||| Sbjct 3020 ATTGCTGTCA-GCGACCTTTCTCCCGAAGTTACAGGTCGATTTTGCCTAATTCCTTAACC 2962 Query 356 AT 357 || Sbjct 2961 AT 2960 >seq6284 Length=6094 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 4690 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 4631 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4630 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4571 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 4570 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 4511 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 4510 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 4451 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 4450 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 4391 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 4390 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 4339 >seq6090 Length=481770 Score = 302 bits (334), Expect = 1e-79 Identities = 281/353 (80%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | |||||| |||| || | ||||||||||||| |||||| Sbjct 39654 GCATCTTCACATACATGTCTATTTCATCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 39713 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 39714 ACGCCTTTCGTACGGGTCGGAACTTACCAGACAAGGAATTTCGCTACCTTAGGACCGTTA 39773 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 |||||| |||||||||| || ||||||| ||| | ||| | | | || | || Sbjct 39774 TAGTTATGGCCGCCGTTCACCGGGGCTTCAGTCGCCGGCTCCCCTGTCATCAGGTCACCA 39833 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 39834 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 39893 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || | ||||||||||||||||||||||||| |||||| || | ||| ||| | Sbjct 39894 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACAGCGACCCCCTTTGT 39953 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||| | ||||||| ||| |||||||||||||||||| Sbjct 39954 GAG-GAGGCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTA 40005 >seq14093 Length=47550 Score = 268 bits (296), Expect = 2e-69 Identities = 285/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 19313 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 19254 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 19253 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 19194 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 19193 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 19142 Query 181 AGATCCCC--TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || || || || ||||||||||||||||| ||||| ||||||||||| || | | Sbjct 19141 ACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 19082 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 19081 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 19022 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 19021 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 18962 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 18961 CTTCGACATGGTTCTC 18946 >seq8932 Length=1192 Score = 251 bits (278), Expect = 2e-64 Identities = 220/272 (81%), Gaps = 9/272 (3%) Strand=Plus/Minus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| |||||| | | ||||||| | || Sbjct 285 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTCTGCTGGAGACAGCGGGGAAG 226 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 225 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 166 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||| ||||||| | | | || |||| | | Sbjct 165 CGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATCAAGAGC-----TTGC---ACCC 114 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 || | |||||||||||||||||||||||||||| ||||||| || ||| || || Sbjct 113 CAT-CAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 55 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 ||||| |||||||||| ||||||||||| Sbjct 54 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 23 >seq12171 Length=83436 Score = 147 bits (162), Expect = 5e-33 Identities = 125/154 (81%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 45101 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 45160 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 45161 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 45220 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 | |||| |||||| |||||||||||| ||||||| Sbjct 45221 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 45254 >seq7337 Length=334867 Score = 95.1 bits (104), Expect = 3e-17 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||||| || || | ||| |||||| |||||| || ||| || |||| | Sbjct 127889 ATTTCACCGAACCTCTTTTCGAGGTAGTGCCTGGGTCGTTATGCTTTTTGTATAGGTCAG 127830 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTT 143 |||||||| ||||| |||||| ||||||||||||| |||||||||| | |||| || Sbjct 127829 AACTTACCTGACAAAGAATTTTGCTACCTTAGGACTGTTATAGTTATAGACGCCATT 127773 >seq1924 Length=26490 Score = 87.8 bits (96), Expect = 4e-15 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| | ||| |||||||| ||| ||||| ||||||||| ||||| Sbjct 19990 GCATCTGCACAGTTATTGTAATTTCACTGAGACTATTATTGAGACAGCTGTTGTATCGTG 20049 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 | | ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 20050 AAATCATTCATGCAAGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGACCCTCA 20109 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 |||||| ||||||| || | |||| || Sbjct 20110 TAGTTAAGGCCGCCATTGATCGGGGTTT 20137 >seq5578 Length=1651365 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---T 295 ||| || || | |||||||||||||||| ||| || || |||| || || | || | Sbjct 1112455 CTTTGCGGAGATCTGTGTTTTTGGTAAATAGTTGCCCGGTCCTAGTCATTGTGACCCCCT 1112514 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCT 350 | || |||||||||||||||| |||||||||||| |||||||| ||||||| Sbjct 1112515 TTGTGAGG-AGGCACCCCTTCTCCCGAAGTTACGGGGTTATTTTGCCAAGTTCCT 1112568 >seq8923 Length=1411 Score = 84.2 bits (92), Expect = 5e-14 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| ||||| || | ||||||| |||||||| Sbjct 456 ATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGTATCGTTAC 397 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 || ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | | Sbjct 396 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCA-C 338 Query 129 GTTACGGCCGCCGTTTACTGGGG 151 |||| ||||||| || || |||| Sbjct 337 GTTAAGGCCGCCTTTAACCGGGG 315 >seq14277 Length=509 Score = 73.4 bits (80), Expect = 8e-11 Identities = 102/143 (71%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| ||||| || ||||||||| ||||||| Sbjct 166 ATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATTGAGACAGCTGTTGTATCGTTAA 225 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 | ||| ||| | | | | ||| | | || || ||| ||||||||||||||| | || Sbjct 226 ATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGACCCTCATC 285 Query 129 GTTACGGCCGCCGTTTACTGGGG 151 | || ||||||| || | ||||| Sbjct 286 GGTAAGGCCGCCATTGATTGGGG 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062241543040