Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq11782 358 1e-96
seq7215 300 3e-79
seq7136 300 3e-79
seq1592 300 3e-79
seq9483 206 4e-51
>seq11782
Length=94184
Score = 358 bits (396), Expect = 1e-96
Identities = 237/259 (92%), Gaps = 3/259 (1%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93549 TACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 93490
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 93489 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCTGC 93431
Query 121 CACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| ||| || | || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 93430 GTACTGCCAAAG-CAATACGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 93372
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 93371 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 93312
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||
Sbjct 93311 AAAGAGCTCTCAATCTGTC 93293
Score = 300 bits (332), Expect = 3e-79
Identities = 226/261 (87%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82482 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 82423
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 82422 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 82365
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 82364 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 82305
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82304 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 82245
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 82244 AGAAAGAGCTCTCAGTCTGTC 82224
>seq7215
Length=344122
Score = 300 bits (332), Expect = 3e-79
Identities = 226/261 (87%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8945 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 9004
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 9005 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 9062
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 9063 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 9122
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9123 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 9182
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 9183 AGAAAGAGCTCTCAGTCTGTC 9203
>seq7136
Length=2357723
Score = 300 bits (332), Expect = 3e-79
Identities = 226/261 (87%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380981 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1380922
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 1380921 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 1380864
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 1380863 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 1380804
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380803 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 1380744
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 1380743 AGAAAGAGCTCTCAGTCTGTC 1380723
Score = 293 bits (324), Expect = 4e-77
Identities = 225/261 (86%), Gaps = 7/261 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390279 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1390220
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 1390219 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 1390162
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 1390161 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 1390102
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1390101 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCAT-CACCACCACCCATAGAATCA 1390043
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 1390042 AGAAAGAGCTCTCAGTCTGTC 1390022
>seq1592
Length=28874
Score = 300 bits (332), Expect = 3e-79
Identities = 226/261 (87%), Gaps = 6/261 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28620 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 28561
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 28560 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 28503
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 28502 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 28443
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 28442 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 28383
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 28382 AGAAAGAGCTCTCAGTCTGTC 28362
Score = 255 bits (282), Expect = 9e-66
Identities = 181/206 (88%), Gaps = 1/206 (0%)
Strand=Plus/Minus
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| ||
Sbjct 20144 ACCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGC 20086
Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180
|||| | | || | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 20085 GACCAGCAAAAGCTGGCCGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTA 20026
Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240
| ||||||| |||| |||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 20025 AGCAGACAAGTCACCCCACGAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGA 19966
Query 241 AAGAGCTATCAATCTGTCCTCCCTCG 266
||||||| |||||||||| |||||
Sbjct 19965 AAGAGCTCTCAATCTGTCAATCCTCG 19940
Score = 104 bits (114), Expect = 4e-20
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20611 TACTCGTTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 20552
>seq9483
Length=174417
Score = 206 bits (228), Expect = 4e-51
Identities = 172/207 (83%), Gaps = 5/207 (2%)
Strand=Plus/Minus
Query 55 TCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAG 112
||| |||| ||||||||||||||||||| | | || |||| | ||||||||||||||
Sbjct 147950 TCAAAGACTCGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAG 147893
Query 113 AAGCCAGCCACCAACC-ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTA 171
|||| ||||| | ||| |||| |||||||| | |||||||||||||||
Sbjct 147892 AAGCTGGCCACGGAGGGATACCTCCGCAAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTA 147833
Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 147832 ACGGAATTAACCAAACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 147773
Query 232 GAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||| ||| ||||||
Sbjct 147772 GAATCAAGAAAGAGCTCTCAGTCTGTC 147746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796684871115
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