Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq10345 217 3e-54
seq8932 190 4e-46
seq12318 183 6e-44
seq14093 107 4e-21
>seq10345
Length=916
Score = 217 bits (240), Expect = 3e-54
Identities = 185/228 (81%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
|||| |||| | ||| |||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 780 GGACCATGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 721
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231
| ||| | | |||||| ||| ||||| || ||| | ||| ||||||||||| | |
Sbjct 720 TACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCGTAGAGTATAAAGGCAAAAGCGCGC 661
Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291
|| ||||||| |||| |||||| |||||| |||||||| || |||| |||||||| |||
Sbjct 660 TTAACTGCGAGACCCACAAGTCGAGCAGGTACGAAAGTAGGTCTTAGTGATCCGGTGGTT 601
Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| |||||| |||| |||||| ||||||||||| ||| |||||||||
Sbjct 600 CTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 553
>seq8932
Length=1192
Score = 190 bits (210), Expect = 4e-46
Identities = 179/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 467 GGACAGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 526
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231
| ||| | | ||||| || ||||| | || | ||| ||||||||||| | |
Sbjct 527 TACGAAGGTGCGCTCAGACCGGTCGGAAATCGGTCGTAGAGTATAAAGGCAAAAGCGCGC 586
Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291
|||||||||| || || ||| |||||| |||||||| || |||| |||||||| |||
Sbjct 587 TTGACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTCTTAGTGATCCGGTGGTT 646
Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| |||||| |||| |||||| ||||||||||| ||| | |||||||
Sbjct 647 CTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 694
>seq12318
Length=640
Score = 183 bits (202), Expect = 6e-44
Identities = 166/209 (79%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131 GTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCT 190
|||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 1 GTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTACCCTCAGCA 60
Query 191 TGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAA 250
| ||| |||| |||| | |||| || |||| ||||||| ||||||| || ||| |||
Sbjct 61 CGCTTGGTAACCGTGCGTAGAGTGTAATGGCATAAGGGTGCTTGACTGTGAGACCTACAA 120
Query 251 GTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCG 310
||| | |||| |||||| || | || |||||||| ||| | | |||||| |||| |||
Sbjct 121 GTCGATCAGGTGCGAAAGCAGGACATAGTGATCCGGTGGTTCCGTATGGAAGGGCCATCG 180
Query 311 CTCGACGGATAAAAGCTACCCTGGGGATA 339
||| ||||||||| ||| | |||||||
Sbjct 181 CTCATAGGATAAAAGGTACTCCGGGGATA 209
>seq14093
Length=47550
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 19482 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 19541
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| ||| ||| | || || | || || | |||
Sbjct 19542 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 19596
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 19597 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 19656
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 19657 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 19707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982253475040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |