Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq6090 226 6e-57 seq7013 176 1e-41 seq2083 138 2e-30 seq1336 100 6e-19 seq11216 95.1 3e-17 seq9362 95.1 3e-17 >seq6090 Length=481770 Score = 226 bits (250), Expect = 6e-57 Identities = 240/310 (77%), Gaps = 20/310 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 12836 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 12778 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 12777 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 12718 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 12717 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 12658 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 12657 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 12612 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 12611 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 12554 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 12553 GTCCGCCACT 12544 >seq7013 Length=359222 Score = 176 bits (194), Expect = 1e-41 Identities = 151/184 (82%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 14 AGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATT 73 || |||||| | | |||| | ||||| || |||||||||| ||||||| || ||| Sbjct 119725 AGGCCTTCTACCTC-CACGAGACATTG-CTCTGTCAGGCTTTCACCCATTGCGGAAAATT 119668 Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133 |||||||||| |||||||||||||| ||| | |||||||||| ||||| || |||||||| Sbjct 119667 CCCCACTGCTACCTCCCGTAGGAGTTTGGGCTGTGTCTCAGTCCCAGTATGGCTGATCAT 119608 Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 |||||| |||||| ||| |||| || |||| || ||| ||| |||||||||||||||||| Sbjct 119607 CCTCTCGGACCAGCTACTGATCATCACCTTAGTAAGCTATTGCCTCACCAACTAGCTAAT 119548 Query 194 CCGA 197 | || Sbjct 119547 CAGA 119544 >seq2083 Length=391 Score = 138 bits (152), Expect = 2e-30 Identities = 89/96 (93%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| || |||||||||||||| || |||||||||||||||||| |||||||||||| Sbjct 97 CACGCGGGAT-GGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTC 39 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 |||||||||||||| |||||||||||| |||||||| Sbjct 38 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTG 3 >seq1336 Length=1448602 Score = 100 bits (110), Expect = 6e-19 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| |||||||| || ||| || ||||||||| || |||||||||||||| | Sbjct 173619 CACACGGCATTG-CTCCTTCAAAATTACGCCCATTGCGGAAAATTCCCCACTGCTG---C 173674 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||| ||| | | ||||||| | | |||| ||| |||||||||| | ||| | Sbjct 173675 CCCTAGGAGTTTGGGCTGCATCTCAGTCCTAATGTGGTTGACCATCCTCTCAAATCAGCT 173734 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 | |||| ||| || || | | ||| |||| |||||||| ||||| Sbjct 173735 ATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATC 173780 >seq11216 Length=109004 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 |||||| ||| |||||||||||| || ||||||||||||||||||| || |||||| Sbjct 104003 CCTTCTACCAC-CACGCGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCC 104060 Query 77 CACTGCTGCCTCCCGTAGGAGTCT 100 |||||||||||||||||||| ||| Sbjct 104061 CACTGCTGCCTCCCGTAGGACTCT 104084 >seq9362 Length=181282 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 |||||| ||| |||||||||||| || ||||||||||||||||||| || |||||| Sbjct 6227 CCTTCTACCAC-CACGCGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCC 6284 Query 77 CACTGCTGCCTCCCGTAGGAGTCT 100 |||||||||||||||||||| ||| Sbjct 6285 CACTGCTGCCTCCCGTAGGACTCT 6308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071840111200