Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq6090 226 6e-57
seq7013 176 1e-41
seq2083 138 2e-30
seq1336 100 6e-19
seq11216 95.1 3e-17
seq9362 95.1 3e-17
>seq6090
Length=481770
Score = 226 bits (250), Expect = 6e-57
Identities = 240/310 (77%), Gaps = 20/310 (6%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 12836 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 12778
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 12777 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 12718
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 12717 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 12658
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267
|| || ||| || ||| |||| | | | | | || | ||||||||
Sbjct 12657 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 12612
Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325
| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||||
Sbjct 12611 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 12554
Query 326 GTCCGCCGCT 335
||||||| ||
Sbjct 12553 GTCCGCCACT 12544
>seq7013
Length=359222
Score = 176 bits (194), Expect = 1e-41
Identities = 151/184 (82%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 14 AGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATT 73
|| |||||| | | |||| | ||||| || |||||||||| ||||||| || |||
Sbjct 119725 AGGCCTTCTACCTC-CACGAGACATTG-CTCTGTCAGGCTTTCACCCATTGCGGAAAATT 119668
Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133
|||||||||| |||||||||||||| ||| | |||||||||| ||||| || ||||||||
Sbjct 119667 CCCCACTGCTACCTCCCGTAGGAGTTTGGGCTGTGTCTCAGTCCCAGTATGGCTGATCAT 119608
Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
|||||| |||||| ||| |||| || |||| || ||| ||| ||||||||||||||||||
Sbjct 119607 CCTCTCGGACCAGCTACTGATCATCACCTTAGTAAGCTATTGCCTCACCAACTAGCTAAT 119548
Query 194 CCGA 197
| ||
Sbjct 119547 CAGA 119544
>seq2083
Length=391
Score = 138 bits (152), Expect = 2e-30
Identities = 89/96 (93%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
||||||| || |||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct 97 CACGCGGGAT-GGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTC 39
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124
|||||||||||||| |||||||||||| ||||||||
Sbjct 38 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTG 3
>seq1336
Length=1448602
Score = 100 bits (110), Expect = 6e-19
Identities = 123/166 (74%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
||| |||||||| || ||| || ||||||||| || |||||||||||||| |
Sbjct 173619 CACACGGCATTG-CTCCTTCAAAATTACGCCCATTGCGGAAAATTCCCCACTGCTG---C 173674
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|| ||||||| ||| | | ||||||| | | |||| ||| |||||||||| | ||| |
Sbjct 173675 CCCTAGGAGTTTGGGCTGCATCTCAGTCCTAATGTGGTTGACCATCCTCTCAAATCAGCT 173734
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
| |||| ||| || || | | ||| |||| |||||||| |||||
Sbjct 173735 ATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATC 173780
>seq11216
Length=109004
Score = 95.1 bits (104), Expect = 3e-17
Identities = 73/84 (87%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76
|||||| ||| |||||||||||| || ||||||||||||||||||| || ||||||
Sbjct 104003 CCTTCTACCAC-CACGCGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCC 104060
Query 77 CACTGCTGCCTCCCGTAGGAGTCT 100
|||||||||||||||||||| |||
Sbjct 104061 CACTGCTGCCTCCCGTAGGACTCT 104084
>seq9362
Length=181282
Score = 95.1 bits (104), Expect = 3e-17
Identities = 73/84 (87%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76
|||||| ||| |||||||||||| || ||||||||||||||||||| || ||||||
Sbjct 6227 CCTTCTACCAC-CACGCGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCC 6284
Query 77 CACTGCTGCCTCCCGTAGGAGTCT 100
|||||||||||||||||||| |||
Sbjct 6285 CACTGCTGCCTCCCGTAGGACTCT 6308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071840111200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |