Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq7100 374 3e-101
seq8600 340 7e-91
seq7050 291 3e-76
seq737 246 1e-62
seq6090 215 2e-53
seq14093 161 4e-37
>seq7100
Length=3288
Score = 374 bits (414), Expect = 3e-101
Identities = 450/601 (75%), Gaps = 22/601 (4%)
Strand=Plus/Minus
Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62
||||||||| ||| | |||||||||| | ||| | | ||| || |||||||
Sbjct 2739 GACTACGGACGTTAG-CACCCGCAGTCTGTCTCCCG-GATAGTACTCATAGGTATTCGGA 2682
Query 63 GTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCGG 121
||||| | || |||||| | | | |||||||| | | |||||||||||| ||
Sbjct 2681 GTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCT- 2623
Query 122 GAAGAAACACG--CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179
| | | || ||| || |||||||| ||||||||||||||||||||||| |||
Sbjct 2622 -ATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCAAG 2564
Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239
||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct 2563 TTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAACGACAGTGGGT 2504
Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299
||||||||||| || |||||| ||||||||||| |||||||||||| | | | ||
Sbjct 2503 TCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCTCATGGATAGATCGCCTGGTTT 2444
Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359
||||||| | | || ||| | |||||||||| |||||| |||| |||||||| |||
Sbjct 2443 CGGGTCTATACCCAGCAACT-AAACGCCCTATTAAGACTCGATTTCTCTACGGCTCCCCT 2385
Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419
| || |||||||||||| || || || |||| | | |||| | ||||||| ||||
Sbjct 2384 ATAC-GGTTAACCTCGCTACTGAA-TATAAGTCGCTGACCCATTATACAAAAGGTACGCA 2327
Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479
||||| ||| |||| ||||| || | ||||| ||| |||||||||
Sbjct 2326 GTCAC-----ACCACGAAGG------TGCTCCCACTGCTTGTATGCATGCGGTTTCAGGA 2278
Query 480 ACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538
|||||||||||||| | ||||||| |||||| |||||||||||||||||| || | |||
Sbjct 2277 TCTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTA 2218
Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598
||||||| |||||||||||| ||| || ||||||| ||| ||||| || | ||||
Sbjct 2217 TCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAGGTTTC 2158
Query 599 A 599
|
Sbjct 2157 A 2157
>seq8600
Length=1328
Score = 340 bits (376), Expect = 7e-91
Identities = 415/557 (75%), Gaps = 18/557 (3%)
Strand=Plus/Plus
Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103
||||| || |||||||||||| | || |||||| | | | |||||||| | |
Sbjct 577 CACTTGTAGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 636
Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162
|||||||||||| || | || ||| | | |||| |||||||| ||||| ||||
Sbjct 637 ACAGTGCTCTACCCCCTACAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 694
Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222
||||||||||| | || |||||| ||||||||| || ||||||||||||||| || | |
Sbjct 695 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAGGTCATCCGCTAACT 754
Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282
||||||| ||| |||||||||||||| | || ||||| ||||||||||||||||
Sbjct 755 TTTCAACGGTAGTCGGTTCGGTCCTCCAGTCAGTGTTACCTAACCTTCAACCTGCCCATG 814
Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342
|||||||| | | ||||||||| | || ||| | |||||||||| ||||||||
Sbjct 815 GATAGATCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGCT 873
Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402
||||||||| || ||| | | |||||| ||||| || || || |||| | | |||
Sbjct 874 TTCGCTACGCCTCCCCTATTC-GGTTAAGCTCGCCACTGAA-AATAAGTCGCTGACCCAT 931
Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462
| | ||||||| |||| |||||| | |||| | ||||| || | |||||
Sbjct 932 TATACAAAAGGTACGCAGTCACC-----CAACAAAG-----TGGGCTCCCACTGCTTGTA 981
Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTC 521
||| | ||||||||| |||||||||||||| | | ||||| |||||| ||||||||||
Sbjct 982 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 1041
Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581
|||||||| || | |||||||||| || ||||||||| ||| || ||||||| |||
Sbjct 1042 ACGGTACTGGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 1101
Query 582 GATTCACACGAAATTTC 598
|||| || || ||||
Sbjct 1102 TGTTCAGACAAAGTTTC 1118
>seq7050
Length=3442
Score = 291 bits (322), Expect = 3e-76
Identities = 406/558 (73%), Gaps = 36/558 (6%)
Strand=Plus/Minus
Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111
|||||||||||||| | | |||| || ||| |||||| ||| |||| |||
Sbjct 2208 GCATTCGGAGTTTGTCAGGAATTGGTAGGCG-GTGAAGCCCCCGCATCCAATCAGTAGCT 2150
Query 112 CTACCTCCGGGAAGAAAC---ACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168
||||||| || | || || |||||||||||||||||||||||||||| || ||
Sbjct 2149 CTACCTCT---AATATACTTTACTAAACGCTGCACCTAAATGCATTTCGGGGAGTACGAG 2093
Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228
|||| | |||||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct 2092 CTATTTCCCAGTTTGATTGGCCTTTCACCCCTACCCACAGGTCATCCGAAGACTTTTCAA 2033
Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288
| | | ||||||||||||||| || ||||| |||||||||||||||||| ||||
Sbjct 2032 CGTCAACCGGTTCGGTCCTCCACTTTGTGTTACCAAAGCTTCAACCTGCCCATGGGTAGA 1973
Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCA---TA-CGCCCTATTCGGACTCGCTTT 344
|||| | |||| ||| | | ||||| | || ||||||||| ||||||||||
Sbjct 1972 TCACAAGGTTTCGCGTC----TAATACCACTGACTCTATCGCCCTATTAAGACTCGCTTT 1917
Query 345 CGCTACGGCTAC---CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCA 401
|||||||||||| || | ||||||| || | ||| |||||| |||||||
Sbjct 1916 CGCTACGGCTACGTACCTGAAGTACTTAACCTTGCCA-GTAACATTAACTCGTAGGCTCA 1858
Query 402 TTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGT 461
|| | |||||||||||||||||| || | || | |||||||| | ||||
Sbjct 1857 TTATGCAAAAGGCACGCCGTCAC-----ACTT-------ACGT--GCTCCGACCGCTTGT 1812
Query 462 AGGCACATGGTTTCAGGTACTATTTC-ACTCCCCGCCAGGGGTACTTTTCACCTTTCCCT 520
|||| | |||||||||| ||||||| ||| | | | |||||||||||||| |
Sbjct 1811 AGGCGTACGGTTTCAGGTTCTATTTCAACTATCTATTCGATATGCTTTTCACCTTTCCTT 1752
Query 521 CACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCC 580
||| ||||| || | ||||||||| |||||||||||| ||| | |||||| ||
Sbjct 1751 CACAGTACTAGTTCACTATCGGTCTTTGAGGAGTATTTAGCCTTGGAAGATGGTCCTCCC 1692
Query 581 AGATTCACACGAAATTTC 598
| |||| || ||||||
Sbjct 1691 ATATTCGGACAGAATTTC 1674
>seq737
Length=443
Score = 246 bits (272), Expect = 1e-62
Identities = 304/412 (74%), Gaps = 9/412 (2%)
Strand=Plus/Minus
Query 189 CCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTC 248
||||||||||||| ||||| ||||||| |||||||| ||||||| ||||
Sbjct 443 CCTTTCACCCCTAGCCACACGTCATCCAAGACCTTTTCAACGGGCACTGGTTCGGACCTC 384
Query 249 CACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTG 308
|| ||| |||||| ||||| ||||| ||||| ||||||||| | |||||||||
Sbjct 383 CAGTGGGTGTTACCCCACCTTCATCCTGCACATGGCTAGATCACTCGGTTTCGGGTCTAA 324
Query 309 ATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT 368
| | ||| | ||||||| ||| |||||||||||||| || || | || ||| ||
Sbjct 323 AGCCACGAACTGA-ACGCCCTGTTCAGACTCGCTTTCGCTGCGCCTCCACCTATCGGCTT 265
Query 369 AACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGG 428
|| ||||| | ||| || |||| | | |||| | ||||||| |||| |||||| |
Sbjct 264 AAGCTCGCT-CGTAACTTTAAGTCGCTGACCCATTATACAAAAGGTACGCGGTCACCCAG 206
Query 429 TACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCA 488
|| | ||| ||||| || | ||||| ||| ||||||||||||| |||||
Sbjct 205 GACGAAC------CTTGGGCTCCCACTGTTTGTAAGCATCCGGTTTCAGGTACTCTTTCA 152
Query 489 CTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547
|||||| | ||||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 151 CTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTATCGGTCATT 92
Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||| |||||||| |||||||||| ||| |||| || ||||||
Sbjct 91 GAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTTCA 40
>seq6090
Length=481770
Score = 215 bits (238), Expect = 2e-53
Identities = 305/421 (72%), Gaps = 27/421 (6%)
Strand=Plus/Minus
Query 186 TGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTC 245
|||| ||||||||||| ||||| |||||| || | | |||||| | ||| ||||||| |
Sbjct 17176 TGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGAC 17117
Query 246 CTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305
|||||| || | |||| |||||| |||| |||||||||||||| | ||||||||
Sbjct 17116 CTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTC 17057
Query 306 T-TGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACAC 363
| | | ||| || | ||||||| |||||||||||||||||||| ||
Sbjct 17056 CATAAGCAGTGACAATT----GCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTG 17004
Query 364 GGGT----TAACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGC 418
|| | ||||| || ||| | | | |||| |||||||||||||| ||||||||
Sbjct 17003 GGTTCCCTTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGC 16946
Query 419 CGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGG 478
|||| | || ||| | |||| || | ||| || | ||||||| |
Sbjct 16945 GGTCAGA--GCCCCG----GGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATG 16897
Query 479 TACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538
| ||||||||||||||| ||||| ||||||||| ||||||||||||||| | |||||
Sbjct 16896 TTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTA 16837
Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598
||||||||| |||||||||||| ||| |||||||| | |||||||||| ||| |
Sbjct 16836 TCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCC 16777
Query 599 A 599
|
Sbjct 16776 A 16776
>seq14093
Length=47550
Score = 161 bits (178), Expect = 4e-37
Identities = 344/499 (69%), Gaps = 26/499 (5%)
Strand=Plus/Minus
Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146
||||| |||||| |||| ||||||||||||| || | ||| ||||| || |
Sbjct 18022 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 17963
Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206
||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| ||||
Sbjct 17962 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 17903
Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265
| ||||||||| | ||| | || || ||||||||||||||||| | | ||| | |
Sbjct 17902 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 17843
Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325
||||||||||| ||||| |||||| | | |||||||| || | | | | |
Sbjct 17842 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 17784
Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAA 383
|||| || || | | | || |||| || | || |||| || | | ||
Sbjct 17783 ----ATTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCAT 17732
Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-CTAAAAGGC 440
| ||||| | | ||| | ||||||| ||||||| | || || | ||
Sbjct 17731 TTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCT-----TT 17680
Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCCA 498
||| | || |||| |||||| ||| | | |||||| ||||| |||||||
Sbjct 17679 ACTACTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAAT 17620
Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558
|||| ||||||||||||||||||||||||| | |||||||||||| |||| || ||
Sbjct 17619 AGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCATTGAGGAATACTT 17560
Query 559 AGGCTTAACGGGTGGTCCC 577
||||||| ||||||||||
Sbjct 17559 AGGCTTAGAGGGTGGTCCC 17541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817328904960
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