Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq7100 374 3e-101 seq8600 340 7e-91 seq7050 291 3e-76 seq737 246 1e-62 seq6090 215 2e-53 seq14093 161 4e-37 >seq7100 Length=3288 Score = 374 bits (414), Expect = 3e-101 Identities = 450/601 (75%), Gaps = 22/601 (4%) Strand=Plus/Minus Query 3 GACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGA 62 ||||||||| ||| | |||||||||| | ||| | | ||| || ||||||| Sbjct 2739 GACTACGGACGTTAG-CACCCGCAGTCTGTCTCCCG-GATAGTACTCATAGGTATTCGGA 2682 Query 63 GTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCCGG 121 ||||| | || |||||| | | | |||||||| | | |||||||||||| || Sbjct 2681 GTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGCTCTACCCCCT- 2623 Query 122 GAAGAAACACG--CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 | | | || ||| || |||||||| ||||||||||||||||||||||| ||| Sbjct 2622 -ATGGTATTCGTCCGAGGCGCTACCTAAATAGCTTTCGGGGAGAACCAGCTATCACCAAG 2564 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||| |||||||||||||||||||| |||||||||| |||||||| ||||||| Sbjct 2563 TTTGATTAGCCTTTCACCCCTATCCACAAGTCATCCCCTGGCTTTTCAACGACAGTGGGT 2504 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||| || |||||| ||||||||||| |||||||||||| | | | || Sbjct 2503 TCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCTCATGGATAGATCGCCTGGTTT 2444 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | || ||| | |||||||||| |||||| |||| |||||||| ||| Sbjct 2443 CGGGTCTATACCCAGCAACT-AAACGCCCTATTAAGACTCGATTTCTCTACGGCTCCCCT 2385 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 | || |||||||||||| || || || |||| | | |||| | ||||||| |||| Sbjct 2384 ATAC-GGTTAACCTCGCTACTGAA-TATAAGTCGCTGACCCATTATACAAAAGGTACGCA 2327 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 ||||| ||| |||| ||||| || | ||||| ||| ||||||||| Sbjct 2326 GTCAC-----ACCACGAAGG------TGCTCCCACTGCTTGTATGCATGCGGTTTCAGGA 2278 Query 480 ACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 |||||||||||||| | ||||||| |||||| |||||||||||||||||| || | ||| Sbjct 2277 TCTATTTCACTCCCCTCACAGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTA 2218 Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 ||||||| |||||||||||| ||| || ||||||| ||| ||||| || | |||| Sbjct 2217 TCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAGGTTTC 2158 Query 599 A 599 | Sbjct 2157 A 2157 >seq8600 Length=1328 Score = 340 bits (376), Expect = 7e-91 Identities = 415/557 (75%), Gaps = 18/557 (3%) Strand=Plus/Plus Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103 ||||| || |||||||||||| | || |||||| | | | |||||||| | | Sbjct 577 CACTTGTAGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 636 Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||||||| || | || ||| | | |||| |||||||| ||||| |||| Sbjct 637 ACAGTGCTCTACCCCCTACAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 694 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222 ||||||||||| | || |||||| ||||||||| || ||||||||||||||| || | | Sbjct 695 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAGGTCATCCGCTAACT 754 Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 ||||||| ||| |||||||||||||| | || ||||| |||||||||||||||| Sbjct 755 TTTCAACGGTAGTCGGTTCGGTCCTCCAGTCAGTGTTACCTAACCTTCAACCTGCCCATG 814 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 |||||||| | | ||||||||| | || ||| | |||||||||| |||||||| Sbjct 815 GATAGATCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGCT 873 Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||||||||| || ||| | | |||||| ||||| || || || |||| | | ||| Sbjct 874 TTCGCTACGCCTCCCCTATTC-GGTTAAGCTCGCCACTGAA-AATAAGTCGCTGACCCAT 931 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | ||||||| |||| |||||| | |||| | ||||| || | ||||| Sbjct 932 TATACAAAAGGTACGCAGTCACC-----CAACAAAG-----TGGGCTCCCACTGCTTGTA 981 Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTC 521 ||| | ||||||||| |||||||||||||| | | ||||| |||||| |||||||||| Sbjct 982 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 1041 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 |||||||| || | |||||||||| || ||||||||| ||| || ||||||| ||| Sbjct 1042 ACGGTACTGGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 1101 Query 582 GATTCACACGAAATTTC 598 |||| || || |||| Sbjct 1102 TGTTCAGACAAAGTTTC 1118 >seq7050 Length=3442 Score = 291 bits (322), Expect = 3e-76 Identities = 406/558 (73%), Gaps = 36/558 (6%) Strand=Plus/Minus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111 |||||||||||||| | | |||| || ||| |||||| ||| |||| ||| Sbjct 2208 GCATTCGGAGTTTGTCAGGAATTGGTAGGCG-GTGAAGCCCCCGCATCCAATCAGTAGCT 2150 Query 112 CTACCTCCGGGAAGAAAC---ACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 ||||||| || | || || |||||||||||||||||||||||||||| || || Sbjct 2149 CTACCTCT---AATATACTTTACTAAACGCTGCACCTAAATGCATTTCGGGGAGTACGAG 2093 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 |||| | |||||||||||||||||||||||| ||||||||||||| | ||||||| Sbjct 2092 CTATTTCCCAGTTTGATTGGCCTTTCACCCCTACCCACAGGTCATCCGAAGACTTTTCAA 2033 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | | ||||||||||||||| || ||||| |||||||||||||||||| |||| Sbjct 2032 CGTCAACCGGTTCGGTCCTCCACTTTGTGTTACCAAAGCTTCAACCTGCCCATGGGTAGA 1973 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCA---TA-CGCCCTATTCGGACTCGCTTT 344 |||| | |||| ||| | | ||||| | || ||||||||| |||||||||| Sbjct 1972 TCACAAGGTTTCGCGTC----TAATACCACTGACTCTATCGCCCTATTAAGACTCGCTTT 1917 Query 345 CGCTACGGCTAC---CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCA 401 |||||||||||| || | ||||||| || | ||| |||||| ||||||| Sbjct 1916 CGCTACGGCTACGTACCTGAAGTACTTAACCTTGCCA-GTAACATTAACTCGTAGGCTCA 1858 Query 402 TTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGT 461 || | |||||||||||||||||| || | || | |||||||| | |||| Sbjct 1857 TTATGCAAAAGGCACGCCGTCAC-----ACTT-------ACGT--GCTCCGACCGCTTGT 1812 Query 462 AGGCACATGGTTTCAGGTACTATTTC-ACTCCCCGCCAGGGGTACTTTTCACCTTTCCCT 520 |||| | |||||||||| ||||||| ||| | | | |||||||||||||| | Sbjct 1811 AGGCGTACGGTTTCAGGTTCTATTTCAACTATCTATTCGATATGCTTTTCACCTTTCCTT 1752 Query 521 CACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCC 580 ||| ||||| || | ||||||||| |||||||||||| ||| | |||||| || Sbjct 1751 CACAGTACTAGTTCACTATCGGTCTTTGAGGAGTATTTAGCCTTGGAAGATGGTCCTCCC 1692 Query 581 AGATTCACACGAAATTTC 598 | |||| || |||||| Sbjct 1691 ATATTCGGACAGAATTTC 1674 >seq737 Length=443 Score = 246 bits (272), Expect = 1e-62 Identities = 304/412 (74%), Gaps = 9/412 (2%) Strand=Plus/Minus Query 189 CCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTC 248 ||||||||||||| ||||| ||||||| |||||||| ||||||| |||| Sbjct 443 CCTTTCACCCCTAGCCACACGTCATCCAAGACCTTTTCAACGGGCACTGGTTCGGACCTC 384 Query 249 CACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTG 308 || ||| |||||| ||||| ||||| ||||| ||||||||| | ||||||||| Sbjct 383 CAGTGGGTGTTACCCCACCTTCATCCTGCACATGGCTAGATCACTCGGTTTCGGGTCTAA 324 Query 309 ATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT 368 | | ||| | ||||||| ||| |||||||||||||| || || | || ||| || Sbjct 323 AGCCACGAACTGA-ACGCCCTGTTCAGACTCGCTTTCGCTGCGCCTCCACCTATCGGCTT 265 Query 369 AACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGG 428 || ||||| | ||| || |||| | | |||| | ||||||| |||| |||||| | Sbjct 264 AAGCTCGCT-CGTAACTTTAAGTCGCTGACCCATTATACAAAAGGTACGCGGTCACCCAG 206 Query 429 TACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCA 488 || | ||| ||||| || | ||||| ||| ||||||||||||| ||||| Sbjct 205 GACGAAC------CTTGGGCTCCCACTGTTTGTAAGCATCCGGTTTCAGGTACTCTTTCA 152 Query 489 CTCCCCGCCA-GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 |||||| | ||||| ||||||||||||||||||||||||| || |||||||||||| Sbjct 151 CTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTATCGGTCATT 92 Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||| |||||||| |||||||||| ||| |||| || |||||| Sbjct 91 GAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTTCA 40 >seq6090 Length=481770 Score = 215 bits (238), Expect = 2e-53 Identities = 305/421 (72%), Gaps = 27/421 (6%) Strand=Plus/Minus Query 186 TGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTC 245 |||| ||||||||||| ||||| |||||| || | | |||||| | ||| ||||||| | Sbjct 17176 TGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGAC 17117 Query 246 CTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 |||||| || | |||| |||||| |||| |||||||||||||| | |||||||| Sbjct 17116 CTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTC 17057 Query 306 T-TGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACAC 363 | | | ||| || | ||||||| |||||||||||||||||||| || Sbjct 17056 CATAAGCAGTGACAATT----GCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTG 17004 Query 364 GGGT----TAACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGC 418 || | ||||| || ||| | | | |||| |||||||||||||| |||||||| Sbjct 17003 GGTTCCCTTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGC 16946 Query 419 CGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGG 478 |||| | || ||| | |||| || | ||| || | ||||||| | Sbjct 16945 GGTCAGA--GCCCCG----GGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATG 16897 Query 479 TACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTA 538 | ||||||||||||||| ||||| ||||||||| ||||||||||||||| | ||||| Sbjct 16896 TTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTA 16837 Query 539 TCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 ||||||||| |||||||||||| ||| |||||||| | |||||||||| ||| | Sbjct 16836 TCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCC 16777 Query 599 A 599 | Sbjct 16776 A 16776 >seq14093 Length=47550 Score = 161 bits (178), Expect = 4e-37 Identities = 344/499 (69%), Gaps = 26/499 (5%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 18022 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 17963 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 17962 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 17903 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 17902 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 17843 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||||||||| ||||| |||||| | | |||||||| || | | | | | Sbjct 17842 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 17784 Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAA 383 |||| || || | | | || |||| || | || |||| || | | || Sbjct 17783 ----ATTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCCCAT 17732 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-CTAAAAGGC 440 | ||||| | | ||| | ||||||| ||||||| | || || | || Sbjct 17731 TTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCT-----TT 17680 Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCCA 498 ||| | || |||| |||||| ||| | | |||||| ||||| ||||||| Sbjct 17679 ACTACTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAAT 17620 Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 |||| ||||||||||||||||||||||||| | |||||||||||| |||| || || Sbjct 17619 AGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCATTGAGGAATACTT 17560 Query 559 AGGCTTAACGGGTGGTCCC 577 ||||||| |||||||||| Sbjct 17559 AGGCTTAGAGGGTGGTCCC 17541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817328904960