Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq8600 654 0.0 seq7100 504 2e-140 seq737 334 2e-89 seq7050 273 5e-71 seq6090 217 4e-54 seq14093 111 4e-22 seq6000 89.7 1e-15 seq1924 78.8 2e-12 >seq8600 Length=1328 Score = 654 bits (724), Expect = 0.0 Identities = 403/418 (96%), Gaps = 9/418 (2%) Strand=Plus/Plus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | Sbjct 729 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTCA 786 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || |||||| |||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 787 GT-GTTACCTAACCTT-CAACCTGCCCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 841 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 842 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 900 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GCTC-GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 959 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 1019 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1020 GGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGTAGTATTTA 1079 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1080 GCCTTGGAGGATGGTCCCCCCATGTTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 1137 >seq7100 Length=3288 Score = 504 bits (558), Expect = 2e-140 Identities = 370/417 (89%), Gaps = 10/417 (2%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| || || ||||| ||||| ||| ||||||||||||||||||| Sbjct 2545 CCTATCCACAAGTCATCCC-CTGGCTTTT-CAACGACAGTGGGTTCGGTCCTCCAGTTAG 2488 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| |||||||| ||| |||||||||||| ||||| ||||||||| | Sbjct 2487 T-GTTACCCAACCTT-CAACCTGCTCAT-GGATAGATCGCCTGGTTT-CGGGTCTATA-C 2433 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| |||| |||||||| ||||||||| ||| | ||||| ||||||||| ||||||| Sbjct 2432 CCAGCAACTAAACGCCCTATTAAGACTCGATTT-CTCTACGGCTCCCCTATACGGTTAAC 2374 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || || |||||| ||||||||||||||||||||||||||||||||||||||| | || | Sbjct 2373 CTC-GCTACTGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACCACGA 2315 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || | |||||||||||||||| |||| |||||||||||||||||||||||||||| | || Sbjct 2314 AG-GTGCTCCCACTGCTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTCACAGG 2256 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 2255 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAG 2196 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||| ||||| ||||| || |||||||| Sbjct 2195 CCTTGGAGGATGGTCCCCCCATATTCAGACAAGGTTTCACGTGCCTCGCCCTACTCG 2139 >seq737 Length=443 Score = 334 bits (370), Expect = 2e-89 Identities = 321/399 (80%), Gaps = 12/399 (3%) Strand=Plus/Minus Query 27 ACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTG 86 || |||||||||| ||||||| |||||||| || ||||||| ||||| || |||| Sbjct 413 ACCTTTTCAACGGGCACTGGTTCGGACCTCCAGTGGGT-GTTACCCCACCTT-CATCCTG 356 Query 87 CCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAA 146 | ||| || |||||| | |||||| |||||||| || | ||| ||||||| | | Sbjct 355 CACAT-GGCTAGATCACTCGGTTT-CGGGTCTAAAGCCACGA-ACTGAACGCCCTGTTCA 299 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||| ||||||| ||||| | ||||||| || | | ||||||| Sbjct 298 GACTCGCTTT-CGCTGCGCCTCCACCTATCGGCTTAAGCTC-GCTCGTAACTTTAAGTCG 241 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCTT 261 ||||||||||||||||||||||||| |||||||| || || ||||||||||||| || Sbjct 240 CTGACCCATTATACAAAAGGTACGCGGTCACCCAGGACGAACCTTGGGCTCCCACTGTTT 181 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 ||| |||| |||||||||| || ||||||||||||| |||||| |||||| ||||||| Sbjct 180 GTAAGCATCCGGTTTCAGGTACTCTTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCC 121 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 |||||||||||||||| |||||||||| | || |||| |||| |||||||| |||||||| Sbjct 120 CTCACGGTACTAGTTCGCTATCGGTCATTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCC 61 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||||||| |||| |||| ||| |||||||| Sbjct 60 CCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCG 22 >seq7050 Length=3442 Score = 273 bits (302), Expect = 5e-71 Identities = 321/417 (77%), Gaps = 18/417 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||| |||||| ||||| | ||||||||||||||| || || ||| Sbjct 2058 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCACTTTGT-GTT 2002 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| |||||||||||| || |||||| | ||||| || ||||| | || | Sbjct 2001 ACCAAAGCTT-CAACCTGCCCATGGG-TAGATCACAAGGTTT-CGCGTCTAATACC-ACT 1946 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCT-ATTCGGTTAAG 183 |||| | ||||||| ||||||||||||| ||||||| || | ||| | |||| Sbjct 1945 GACTCTATCGCCCTATTAAGACTCGCTTT-CGCTACGGCTACGTACCTGAAGTACTTAAC 1887 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| |||| | | | ||| ||| | | |||||| ||||||| |||| ||||| | | Sbjct 1886 CTT-GCCAGTAACATTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACACTT--A 1830 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 ||| |||| || ||||||| || |||||||||||| ||||||||| || | || Sbjct 1829 CGTG--CTCCGACCGCTTGTAGGCGTACGGTTTCAGGTTCTATTTCAACTATCTATTCGA 1772 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 | |||||| ||||||| |||| |||||||||||||||||||| | || ||||||||| Sbjct 1771 TATGCTTTTCACCTTTCCTTCACAGTACTAGTTCACTATCGGTCTTTGAGGAGTATTTAG 1712 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| |||||||| ||||||||| |||| | ||||||||| |||| | |||||| Sbjct 1711 CCTTGGAAGATGGTCCTCCCATATTCGGACAGAATTTCTCGTGTTCCGCCTTACTCG 1655 >seq6090 Length=481770 Score = 217 bits (240), Expect = 4e-54 Identities = 308/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 17159 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 17103 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 17102 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 17047 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 17046 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 16989 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 16988 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 16932 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 16931 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 16873 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 16872 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 16813 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 16812 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 16758 >seq14093 Length=47550 Score = 111 bits (122), Expect = 4e-22 Identities = 141/193 (73%), Gaps = 17/193 (9%) Strand=Plus/Minus Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---------- 252 |||||||||||| || |||||||||||| || | | |||| ||| Sbjct 17727 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTTTACTACTCCT 17671 Query 253 -CCACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCT 309 | |||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||| Sbjct 17670 TCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCT 17612 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| ||||||||||||||||||| ||| |||||||||| | || | || |||| ||| | Sbjct 17611 TTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCATTGAGGAATACTTAGGCTTAG 17552 Query 370 AGGATGGTCCCCC 382 ||| ||||||||| Sbjct 17551 AGGGTGGTCCCCC 17539 >seq6000 Length=492858 Score = 89.7 bits (98), Expect = 1e-15 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||| ||||||||| || || | | ||| | ||||||||||||| | | ||| |||| Sbjct 338443 CTCACACTGCTTGGGTGCTTAAGCTCTCATGTTCTATTTCACTCCTCGATG-GGGTTTCT 338501 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||| ||||||||| | ||| ||| |||||||||| ||| | |||||||||||| Sbjct 338502 TTTCGCTCTTCCCTCACAATGCTACTTCGCTATCGGTCACTCATGATTATTTAGCCTTG 338560 >seq1924 Length=26490 Score = 78.8 bits (86), Expect = 2e-12 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||||||||||||||||||||||||||| | || | ||||||||||| ||||| || Sbjct 21476 TTTCCCTCACGGTACTAGTTCACTATCGCT-TGTATATTATATTTAGCCTTAGAGGAAGG 21534 Query 377 TCCCCCCATATTCAGACA 394 | |||| ||||||| ||| Sbjct 21535 TTCCCCTATATTCAAACA 21552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241414815360