Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq8600 654 0.0
seq7100 504 2e-140
seq737 334 2e-89
seq7050 273 5e-71
seq6090 217 4e-54
seq14093 111 4e-22
seq6000 89.7 1e-15
seq1924 78.8 2e-12
>seq8600
Length=1328
Score = 654 bits (724), Expect = 0.0
Identities = 403/418 (96%), Gaps = 9/418 (2%)
Strand=Plus/Plus
Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 729 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTCA 786
Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122
|| |||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||
Sbjct 787 GT-GTTACCTAACCTT-CAACCTGCCCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 841
Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 842 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 900
Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCTC-GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 959
Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 1019
Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1020 GGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGTAGTATTTA 1079
Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 GCCTTGGAGGATGGTCCCCCCATGTTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 1137
>seq7100
Length=3288
Score = 504 bits (558), Expect = 2e-140
Identities = 370/417 (89%), Gaps = 10/417 (2%)
Strand=Plus/Minus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| ||||||| ||||| || || ||||| ||||| ||| |||||||||||||||||||
Sbjct 2545 CCTATCCACAAGTCATCCC-CTGGCTTTT-CAACGACAGTGGGTTCGGTCCTCCAGTTAG 2488
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||||||||||| |||||||| ||| |||||||||||| ||||| ||||||||| |
Sbjct 2487 T-GTTACCCAACCTT-CAACCTGCTCAT-GGATAGATCGCCTGGTTT-CGGGTCTATA-C 2433
Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183
||||| |||| |||||||| ||||||||| ||| | ||||| ||||||||| |||||||
Sbjct 2432 CCAGCAACTAAACGCCCTATTAAGACTCGATTT-CTCTACGGCTCCCCTATACGGTTAAC 2374
Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243
|| || |||||| ||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 2373 CTC-GCTACTGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACCACGA 2315
Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
|| | |||||||||||||||| |||| |||||||||||||||||||||||||||| | ||
Sbjct 2314 AG-GTGCTCCCACTGCTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTCACAGG 2256
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2255 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAG 2196
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||
Sbjct 2195 CCTTGGAGGATGGTCCCCCCATATTCAGACAAGGTTTCACGTGCCTCGCCCTACTCG 2139
>seq737
Length=443
Score = 334 bits (370), Expect = 2e-89
Identities = 321/399 (80%), Gaps = 12/399 (3%)
Strand=Plus/Minus
Query 27 ACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTG 86
|| |||||||||| ||||||| |||||||| || ||||||| ||||| || ||||
Sbjct 413 ACCTTTTCAACGGGCACTGGTTCGGACCTCCAGTGGGT-GTTACCCCACCTT-CATCCTG 356
Query 87 CCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAA 146
| ||| || |||||| | |||||| |||||||| || | ||| ||||||| | |
Sbjct 355 CACAT-GGCTAGATCACTCGGTTT-CGGGTCTAAAGCCACGA-ACTGAACGCCCTGTTCA 299
Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205
|||||||||| |||| ||||||| ||||| | ||||||| || | | |||||||
Sbjct 298 GACTCGCTTT-CGCTGCGCCTCCACCTATCGGCTTAAGCTC-GCTCGTAACTTTAAGTCG 241
Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCTT 261
||||||||||||||||||||||||| |||||||| || || ||||||||||||| ||
Sbjct 240 CTGACCCATTATACAAAAGGTACGCGGTCACCCAGGACGAACCTTGGGCTCCCACTGTTT 181
Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321
||| |||| |||||||||| || ||||||||||||| |||||| |||||| |||||||
Sbjct 180 GTAAGCATCCGGTTTCAGGTACTCTTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCC 121
Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381
|||||||||||||||| |||||||||| | || |||| |||| |||||||| ||||||||
Sbjct 120 CTCACGGTACTAGTTCGCTATCGGTCATTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCC 61
Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||| |||||||| |||| |||| ||| ||||||||
Sbjct 60 CCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCG 22
>seq7050
Length=3442
Score = 273 bits (302), Expect = 5e-71
Identities = 321/417 (77%), Gaps = 18/417 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||||||||| ||| |||||| ||||| | ||||||||||||||| || || |||
Sbjct 2058 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCACTTTGT-GTT 2002
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
||| || ||| |||||||||||| || |||||| | ||||| || ||||| | || |
Sbjct 2001 ACCAAAGCTT-CAACCTGCCCATGGG-TAGATCACAAGGTTT-CGCGTCTAATACC-ACT 1946
Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCT-ATTCGGTTAAG 183
|||| | ||||||| ||||||||||||| ||||||| || | ||| | ||||
Sbjct 1945 GACTCTATCGCCCTATTAAGACTCGCTTT-CGCTACGGCTACGTACCTGAAGTACTTAAC 1887
Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243
||| |||| | | | ||| ||| | | |||||| ||||||| |||| ||||| | |
Sbjct 1886 CTT-GCCAGTAACATTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACACTT--A 1830
Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
||| |||| || ||||||| || |||||||||||| ||||||||| || | ||
Sbjct 1829 CGTG--CTCCGACCGCTTGTAGGCGTACGGTTTCAGGTTCTATTTCAACTATCTATTCGA 1772
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
| |||||| ||||||| |||| |||||||||||||||||||| | || |||||||||
Sbjct 1771 TATGCTTTTCACCTTTCCTTCACAGTACTAGTTCACTATCGGTCTTTGAGGAGTATTTAG 1712
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||||| |||||||| ||||||||| |||| | ||||||||| |||| | ||||||
Sbjct 1711 CCTTGGAAGATGGTCCTCCCATATTCGGACAGAATTTCTCGTGTTCCGCCTTACTCG 1655
>seq6090
Length=481770
Score = 217 bits (240), Expect = 4e-54
Identities = 308/415 (74%), Gaps = 16/415 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 17159 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 17103
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 17102 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 17047
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 17046 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 16989
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 16988 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 16932
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 16931 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 16873
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 16872 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 16813
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 16812 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 16758
>seq14093
Length=47550
Score = 111 bits (122), Expect = 4e-22
Identities = 141/193 (73%), Gaps = 17/193 (9%)
Strand=Plus/Minus
Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---------- 252
|||||||||||| || |||||||||||| || | | |||| |||
Sbjct 17727 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTTTACTACTCCT 17671
Query 253 -CCACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCT 309
| |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||
Sbjct 17670 TCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCT 17612
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| ||||||||||||||||||| ||| |||||||||| | || | || |||| ||| |
Sbjct 17611 TTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCATTGAGGAATACTTAGGCTTAG 17552
Query 370 AGGATGGTCCCCC 382
||| |||||||||
Sbjct 17551 AGGGTGGTCCCCC 17539
>seq6000
Length=492858
Score = 89.7 bits (98), Expect = 1e-15
Identities = 92/119 (77%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||| ||||||||| || || | | ||| | ||||||||||||| | | ||| ||||
Sbjct 338443 CTCACACTGCTTGGGTGCTTAAGCTCTCATGTTCTATTTCACTCCTCGATG-GGGTTTCT 338501
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368
|||||| ||||||||| | ||| ||| |||||||||| ||| | ||||||||||||
Sbjct 338502 TTTCGCTCTTCCCTCACAATGCTACTTCGCTATCGGTCACTCATGATTATTTAGCCTTG 338560
>seq1924
Length=26490
Score = 78.8 bits (86), Expect = 2e-12
Identities = 65/78 (83%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376
|||||||||||||||||||||||||||| | || | ||||||||||| ||||| ||
Sbjct 21476 TTTCCCTCACGGTACTAGTTCACTATCGCT-TGTATATTATATTTAGCCTTAGAGGAAGG 21534
Query 377 TCCCCCCATATTCAGACA 394
| |||| ||||||| |||
Sbjct 21535 TTCCCCTATATTCAAACA 21552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241414815360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |