Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq1592 105 4e-21
seq11782 100 2e-19
seq7215 75.2 7e-12
seq7136 75.2 7e-12
>seq1592
Length=28874
Score = 105 bits (116), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 4/86 (5%)
Strand=Plus/Minus
Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98
|||||| | |||||||||||||| || ||||||||| ||||||||||| ||||||||||
Sbjct 20804 TCCGAACGC-CTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 20748
Query 99 GGCAGGGACGTAATACAACGCAAGCT 124
|||||||||||||| |||||||||||
Sbjct 20747 GGCAGGGACGTAAT-CAACGCAAGCT 20723
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 28792 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 28735
Query 122 GCT 124
|||
Sbjct 28734 GCT 28732
>seq11782
Length=94184
Score = 100 bits (110), Expect = 2e-19
Identities = 70/76 (92%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
||||||| |||||| || ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 93731 CTCACTAGGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 93674
Query 109 TAATACAACGCAAGCT 124
|||| |||||||||||
Sbjct 93673 TAAT-CAACGCAAGCT 93659
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 82654 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 82597
Query 122 GCT 124
|||
Sbjct 82596 GCT 82594
>seq7215
Length=344122
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 8773 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 8830
Query 122 GCT 124
|||
Sbjct 8831 GCT 8833
>seq7136
Length=2357723
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 1381153 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1381096
Query 122 GCT 124
|||
Sbjct 1381095 GCT 1381093
Score = 75.2 bits (82), Expect = 7e-12
Identities = 56/63 (89%), Gaps = 2/63 (3%)
Strand=Plus/Minus
Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121
|||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 1390451 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1390394
Query 122 GCT 124
|||
Sbjct 1390393 GCT 1390391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300757939700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |