Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq6090 219 8e-55
seq7013 150 4e-34
seq2083 109 1e-21
seq1336 89.7 1e-15
seq11216 78.8 2e-12
seq9362 78.8 2e-12
>seq6090
Length=481770
Score = 219 bits (242), Expect = 8e-55
Identities = 233/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 12831 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 12772
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 12771 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 12712
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 12711 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 12652
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 12651 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 12608
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 12607 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 12549
Query 300 CCACT 304
|||||
Sbjct 12548 CCACT 12544
>seq7013
Length=359222
Score = 150 bits (166), Expect = 4e-34
Identities = 131/163 (80%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| ||||||| | || || |||||||||| |||||||||||||| ||||| |
Sbjct 119694 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTTTGGGCTG 119635
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||||||||||| | |||| | ||| |||||| | || ||||| |||| || ||| ||
Sbjct 119634 TGTCTCAGTCCCAGTATGGCTGATCATCCTCTCGGACCAGCTACTGATCATCACCTTAGT 119575
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
|||||| ||||||||||| |||||| | | |||||| ||
Sbjct 119574 AAGCTATTGCCTCACCAACTAGCTAATCAGATGTGAGCCCCTC 119532
>seq2083
Length=391
Score = 109 bits (120), Expect = 1e-21
Identities = 75/85 (88%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| |||||| | || |||||||| |||||| || ||||||||||||||||||||||||
Sbjct 86 GCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCT 27
Query 67 GGGCCGTGTCTCAGTCCCAATGTGG 91
|| |||||||||||| ||| |||||
Sbjct 26 GGTCCGTGTCTCAGTACCAGTGTGG 2
>seq1336
Length=1448602
Score = 89.7 bits (98), Expect = 1e-15
Identities = 126/175 (72%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||| || | ||||||| | || || ||||||||||| ||| |||
Sbjct 173624 GGCATTGCTCCTTCAAAATTACGCCCATTGCGGAAAATTCCCCACTGCTG---CCCCTAG 173680
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||| ||||| | ||||||||| ||||||| | || ||||||| | |||| |||
Sbjct 173681 GAGTTTGGGCTGCATCTCAGTCCTAATGTGGTTGACCATCCTCTCAAATCAGCTATTGAT 173740
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
| ||| || || ||||| ||| ||||||| ||||| ||||||||| ||
Sbjct 173741 CATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATC-AACGCGAGCCCCTC 173794
>seq11216
Length=109004
Score = 78.8 bits (86), Expect = 2e-12
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| ||||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 104019 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 104078
Query 61 GAGTCTGGGCC 71
|| ||| ||||
Sbjct 104079 GACTCTAGGCC 104089
>seq9362
Length=181282
Score = 78.8 bits (86), Expect = 2e-12
Identities = 60/71 (85%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| ||||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 6243 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 6302
Query 61 GAGTCTGGGCC 71
|| ||| ||||
Sbjct 6303 GACTCTAGGCC 6313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998251088640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |