Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq6090 219 8e-55 seq7013 150 4e-34 seq2083 109 1e-21 seq1336 89.7 1e-15 seq11216 78.8 2e-12 seq9362 78.8 2e-12 >seq6090 Length=481770 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 12831 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 12772 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 12771 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 12712 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 12711 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 12652 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 12651 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 12608 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 12607 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 12549 Query 300 CCACT 304 ||||| Sbjct 12548 CCACT 12544 >seq7013 Length=359222 Score = 150 bits (166), Expect = 4e-34 Identities = 131/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || |||||||||| |||||||||||||| ||||| | Sbjct 119694 TCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTTTGGGCTG 119635 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| | |||| | ||| |||||| | || ||||| |||| || ||| || Sbjct 119634 TGTCTCAGTCCCAGTATGGCTGATCATCCTCTCGGACCAGCTACTGATCATCACCTTAGT 119575 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||||| ||||||||||| |||||| | | |||||| || Sbjct 119574 AAGCTATTGCCTCACCAACTAGCTAATCAGATGTGAGCCCCTC 119532 >seq2083 Length=391 Score = 109 bits (120), Expect = 1e-21 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| | || |||||||| |||||| || |||||||||||||||||||||||| Sbjct 86 GCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCT 27 Query 67 GGGCCGTGTCTCAGTCCCAATGTGG 91 || |||||||||||| ||| ||||| Sbjct 26 GGTCCGTGTCTCAGTACCAGTGTGG 2 >seq1336 Length=1448602 Score = 89.7 bits (98), Expect = 1e-15 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| || | ||||||| | || || ||||||||||| ||| ||| Sbjct 173624 GGCATTGCTCCTTCAAAATTACGCCCATTGCGGAAAATTCCCCACTGCTG---CCCCTAG 173680 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||| | ||||||||| ||||||| | || ||||||| | |||| ||| Sbjct 173681 GAGTTTGGGCTGCATCTCAGTCCTAATGTGGTTGACCATCCTCTCAAATCAGCTATTGAT 173740 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | ||| || || ||||| ||| ||||||| ||||| ||||||||| || Sbjct 173741 CATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATC-AACGCGAGCCCCTC 173794 >seq11216 Length=109004 Score = 78.8 bits (86), Expect = 2e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 104019 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 104078 Query 61 GAGTCTGGGCC 71 || ||| |||| Sbjct 104079 GACTCTAGGCC 104089 >seq9362 Length=181282 Score = 78.8 bits (86), Expect = 2e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 6243 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 6302 Query 61 GAGTCTGGGCC 71 || ||| |||| Sbjct 6303 GACTCTAGGCC 6313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998251088640