Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq11782 179 4e-43 seq12950 80.6 3e-13 seq7136 80.6 3e-13 seq1592 80.6 3e-13 >seq11782 Length=94184 Score = 179 bits (198), Expect = 4e-43 Identities = 160/194 (82%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 92904 CTAGAAACCAACAAAATAGAAACGCACGTCCTATTCCATTATTCCATGCTAATGTATTCG 92845 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCC-GC 124 ||| | |||||||||||||||||||||||| |||| ||||||||||||| || || | Sbjct 92844 AGCGAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGATCAGCCAAC 92785 Query 125 ACA-CCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCG 181 ||| ||| |||| ||||| | || || ||| ||| ||| | || |||||| || Sbjct 92784 ACACCCAGTGAAGGGCATGC-GGTTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTACACG 92726 Query 182 CCGTGAGGCGGACC 195 | |||||||||||| Sbjct 92725 CGGTGAGGCGGACC 92712 Score = 75.2 bits (82), Expect = 1e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 16 ACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGC 74 ||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| || Sbjct 81827 ACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGC 81769 Query 75 CTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 |||||||| ||||||||||| |||| |||| || Sbjct 81768 TTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 81734 >seq12950 Length=66472 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 4039 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 3981 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 3980 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 3943 >seq7136 Length=2357723 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 1380328 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 1380270 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 1380269 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 1380232 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 1389627 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 1389569 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 1389568 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 1389531 >seq1592 Length=28874 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 19189 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 19131 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 19130 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 19093 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 27967 CCAACAGAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 27909 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 27908 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 27871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595114000110