Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq7100 210 5e-52
seq379 201 3e-49
seq8600 187 6e-45
seq11122 176 1e-41
seq14093 167 5e-39
seq5227 145 2e-32
seq7050 80.6 6e-13
>seq7100
Length=3288
Score = 210 bits (232), Expect = 5e-52
Identities = 295/406 (73%), Gaps = 10/406 (2%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| |||||||||||| | || ||| |
Sbjct 3144 CGACTACGCCTCTCGGCCTCGCCTTAGGGGTCGACTCACCCAGCCCCGATTAACGTTGGA 3085
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||||||| || ||| ||||| || ||||||| || |||||| | |
Sbjct 3084 CTGGAACCCTTGGTCTTTCAGCGAACGGGTTTTTCACCCGTTTTGTCGTTACTCACGTCA 3025
Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177
|||||| |||| | || | ||||| || || || | || ||||| | || |||
Sbjct 3024 GCATTCGCACTTCTGAT-ACCTCCAGCATACT-TCTCAATACACCTTCATCGGCTTACAG 2967
Query 178 GACGCTCCCCTACC-CAACCACACAGGTTG----CCACAGCTTCGGCGGATAACTTAAGC 232
||||||||||||| | ||| | || || |||||||||| ||| || |||
Sbjct 2966 AACGCTCCCCTACCACGTACACTAAAGTGCAAATCCGCAGCTTCGGCACATAGTTTTAGC 2907
Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292
|||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| ||||
Sbjct 2906 CCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGG 2847
Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352
|||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| |
Sbjct 2846 GTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTATGCCTTCCCACATCGTTTCCCACTTA 2787
Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
| | || ||||||||||||| | ||||| ||||| |||||
Sbjct 2786 ACTATGATTTTGGGGCCTTAGCTGGCGGTCTGGATTGTTTTCCTCT 2741
>seq379
Length=457
Score = 201 bits (222), Expect = 3e-49
Identities = 293/412 (71%), Gaps = 23/412 (6%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||| || |||| |||| |||||| ||| ||||||| | || || | | | |
Sbjct 44 CGACTACCCCCTTCGGGCTCGTCTTAGGGGCCGGCTCACCCTGCGCGGATTAGCCTTGCG 103
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
| ||||||||||| |||||| ||| || ||||| | ||||||||||| ||
Sbjct 104 CAGGAACCCTTGGTCTTTCGGCGAGAGGGCATCTCACCCTCTTTATCGCTACTCATGTCT 163
Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178
|||||| |||| | | |||||| || || | ||| | ||||||| || ||
Sbjct 164 GCATTCGCACTTCCGATACCTCCACGACCCATT-ACCAGATCGCTTCACAGGCTTACGGA 222
Query 179 ACGCTCCCCTACCC---------AACCACACAGGTTGCCACAGCTTCGGCGGATAACTTA 229
||||||| ||||| | |||||| || |||||||| | | |||
Sbjct 223 ACGCTCCGCTACCGCGTGGATAAATCCACAC------CCTAAGCTTCGGTGCACGTCTTG 276
Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGA-----CCAGTGAGCTATTACGCACTC 284
||||||| ||||| ||| ||| ||| | ||||| |||||||||| |||||| ||
Sbjct 277 AGCCCCGTTACATCTTCGCCGCAGAAACCCTTGATTAGACCAGTGAGCTGTTACGCTTTC 336
Query 285 TTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTT 344
||| ||||||||||||||| ||||||||||||||||||| | | | ||||||| ||||
Sbjct 337 TTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGGATTTCCACATGCTTT 396
Query 345 CCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
|||||| || | |||| ||| ||||||||| | || |||||||||||||
Sbjct 397 CCCACTTAGACGTGACTTGGGGACCTTAGCTGTAGGTCAGGGCTGTTTCCCT 448
>seq8600
Length=1328
Score = 187 bits (206), Expect = 6e-45
Identities = 285/400 (71%), Gaps = 16/400 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||| | || ||||||||||||| |||||| |||| | | || ||| | |
Sbjct 144 CGACTACGCTTTTCAGCCTCGCCTTAGGGACCGACTAACCCTGCGTCGATTAACGTTGCG 203
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATT--CCCACCCGTCACACGCTACTCATGCC 118
| |||| |||||| |||||| | | || | ||||| | || |||||||| |
Sbjct 204 CAGGAAACCTTGGTCTTTCGGCGTGGGTGTTTTTCACACCCATTGT-CGTTACTCATGTC 262
Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176
|||||| |||| | || | ||||| || | || | || |||||| || |||
Sbjct 263 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 320
Query 177 CGACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236
||||||| ||||| | ||| || |||||||| ||| || |||||||
Sbjct 321 GAACGCTCCTCTACCGCATCAC---------CAANGCTTCGGCACATAGTTTTAGCCCCG 371
Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296
||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| |||
Sbjct 372 TTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGG 431
Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356
||||||| ||||||||||||| | |||||| || ||||||| ||||||||| | ||
Sbjct 432 CTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACTTAACCA 491
Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
|||| ||| |||||||||| | |||||| |||||||||
Sbjct 492 TGACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 531
>seq11122
Length=782
Score = 176 bits (194), Expect = 1e-41
Identities = 290/406 (71%), Gaps = 13/406 (3%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59
|||||||| || ||| |||||||||||| ||||||||||| | || || ||| |||
Sbjct 434 CGACTACGACTTTCGTCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAACGTTGCG 375
Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118
| |||| |||||| |||||| |||| || |||||| | || |||||||| |
Sbjct 374 CAAGGAAACCTTGGGCTTTCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTC 315
Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177
|||||| |||| | | ||||| || || || | || ||||| | || ||
Sbjct 314 AGCATTCGCACTTCCGATACCTCCAGCAGACT-TCTCAATCCACCTTCAACGGCTTACGG 256
Query 178 GACGCTCCCCTACC-CAACCACACAGGT-TGC-CAC----AGCTTCGGCGGATAACTTAA 230
||||||| ||||| | || | | | ||| ||| |||||||| | ||||
Sbjct 255 AACGCTCCTCTACCGCGTACATATAAATATGCACACCCCAAGCTTCGGTTCACTGCTTA- 197
Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290
|||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||
Sbjct 196 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 138
Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350
|| |||||||||| | || |||||||||| ||||| || ||||||| ||| |||||
Sbjct 137 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCCTTTCCACATGGTTTTCCACT 78
Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
|| | || ||| ||||||||| | |||||| |||||||||
Sbjct 77 TAGCAGTGAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 32
>seq14093
Length=47550
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 18299 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 18243
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 18242 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 18183
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 18182 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 18123
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 18122 GTTTCCCTCTCG 18111
>seq5227
Length=304
Score = 145 bits (160), Expect = 2e-32
Identities = 137/175 (78%), Gaps = 5/175 (3%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT----- 261
|| ||||||||| | || ||| ||||||| |||||| ||||||| | | |||
Sbjct 117 CCTCAGCTTCGGTGCATGGCTTCAGCCCCGTTACATTTTCGGCGCAAAGACCCTTATCTA 176
Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321
|||||||||||| |||||| ||||| || |||||||||||| |||||||| ||||||||
Sbjct 177 GACCAGTGAGCTGTTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGTT 236
Query 322 GTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTG 376
|| | | | | |||||||||||||||| || || |||| ||| |||||||||
Sbjct 237 GTTTTGGGATCCTCACATCCTTTCCCACTTAGCCATGACTTGGGGACCTTAGCTG 291
>seq7050
Length=3442
Score = 80.6 bits (88), Expect = 6e-13
Identities = 166/238 (70%), Gaps = 12/238 (5%)
Strand=Plus/Minus
Query 106 CGCTACTCATGCCTGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTT 165
|| ||||||||||| |||| || | | | ||||||||| || | ||| || |||
Sbjct 2589 CGTTACTCATGCCTACATTTTCTTTTCTAGAAGCTCCACCACCCATT-ACCAGGTGACTT 2531
Query 166 CACCACTGACACGACGCTCCCCTACCCAACCA-CACAGGTTG----CCACAGCTTCGGCG 220
| | | | | | ||||||||||| || || | | || ||| ||||||||
Sbjct 2530 CTGCGCCGCTAGAATGCTCCCCTACCAGTACATCAGAAGATGTAATCCATAGCTTCGGTA 2471
Query 221 GATAA-CTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACG 279
||| |||| |||| || ||||| || | ||| || ||| |||||||| |||||
Sbjct 2470 -ATATGCTTATGCCCGATTA--TTATCCATGCCGGATCGCTCGACTAGTGAGCTGTTACG 2414
Query 280 CACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCA 336
||||| || || || | ||||||||||||| ||| |||| | |||| | |||| ||||
Sbjct 2413 CACTCGTTAAATGAATAGCTGCTTCCAAGCTAACATCCTAGCTGTCAAAGCAA-TCCA 2357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177424360960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |