Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq7100 210 5e-52 seq379 201 3e-49 seq8600 187 6e-45 seq11122 176 1e-41 seq14093 167 5e-39 seq5227 145 2e-32 seq7050 80.6 6e-13 >seq7100 Length=3288 Score = 210 bits (232), Expect = 5e-52 Identities = 295/406 (73%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||||| | || ||| | Sbjct 3144 CGACTACGCCTCTCGGCCTCGCCTTAGGGGTCGACTCACCCAGCCCCGATTAACGTTGGA 3085 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||||| || ||| ||||| || ||||||| || |||||| | | Sbjct 3084 CTGGAACCCTTGGTCTTTCAGCGAACGGGTTTTTCACCCGTTTTGTCGTTACTCACGTCA 3025 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || || || | || ||||| | || ||| Sbjct 3024 GCATTCGCACTTCTGAT-ACCTCCAGCATACT-TCTCAATACACCTTCATCGGCTTACAG 2967 Query 178 GACGCTCCCCTACC-CAACCACACAGGTTG----CCACAGCTTCGGCGGATAACTTAAGC 232 ||||||||||||| | ||| | || || |||||||||| ||| || ||| Sbjct 2966 AACGCTCCCCTACCACGTACACTAAAGTGCAAATCCGCAGCTTCGGCACATAGTTTTAGC 2907 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| Sbjct 2906 CCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGG 2847 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| | Sbjct 2846 GTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTATGCCTTCCCACATCGTTTCCCACTTA 2787 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || ||||||||||||| | ||||| ||||| ||||| Sbjct 2786 ACTATGATTTTGGGGCCTTAGCTGGCGGTCTGGATTGTTTTCCTCT 2741 >seq379 Length=457 Score = 201 bits (222), Expect = 3e-49 Identities = 293/412 (71%), Gaps = 23/412 (6%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||| || |||| |||| |||||| ||| ||||||| | || || | | | | Sbjct 44 CGACTACCCCCTTCGGGCTCGTCTTAGGGGCCGGCTCACCCTGCGCGGATTAGCCTTGCG 103 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| |||||| ||| || ||||| | ||||||||||| || Sbjct 104 CAGGAACCCTTGGTCTTTCGGCGAGAGGGCATCTCACCCTCTTTATCGCTACTCATGTCT 163 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178 |||||| |||| | | |||||| || || | ||| | ||||||| || || Sbjct 164 GCATTCGCACTTCCGATACCTCCACGACCCATT-ACCAGATCGCTTCACAGGCTTACGGA 222 Query 179 ACGCTCCCCTACCC---------AACCACACAGGTTGCCACAGCTTCGGCGGATAACTTA 229 ||||||| ||||| | |||||| || |||||||| | | ||| Sbjct 223 ACGCTCCGCTACCGCGTGGATAAATCCACAC------CCTAAGCTTCGGTGCACGTCTTG 276 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGA-----CCAGTGAGCTATTACGCACTC 284 ||||||| ||||| ||| ||| ||| | ||||| |||||||||| |||||| || Sbjct 277 AGCCCCGTTACATCTTCGCCGCAGAAACCCTTGATTAGACCAGTGAGCTGTTACGCTTTC 336 Query 285 TTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTT 344 ||| ||||||||||||||| ||||||||||||||||||| | | | ||||||| |||| Sbjct 337 TTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGGATTTCCACATGCTTT 396 Query 345 CCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 |||||| || | |||| ||| ||||||||| | || ||||||||||||| Sbjct 397 CCCACTTAGACGTGACTTGGGGACCTTAGCTGTAGGTCAGGGCTGTTTCCCT 448 >seq8600 Length=1328 Score = 187 bits (206), Expect = 6e-45 Identities = 285/400 (71%), Gaps = 16/400 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | | || ||| | | Sbjct 144 CGACTACGCTTTTCAGCCTCGCCTTAGGGACCGACTAACCCTGCGTCGATTAACGTTGCG 203 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATT--CCCACCCGTCACACGCTACTCATGCC 118 | |||| |||||| |||||| | | || | ||||| | || |||||||| | Sbjct 204 CAGGAAACCTTGGTCTTTCGGCGTGGGTGTTTTTCACACCCATTGT-CGTTACTCATGTC 262 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 263 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 320 Query 177 CGACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 ||||||| ||||| | ||| || |||||||| ||| || ||||||| Sbjct 321 GAACGCTCCTCTACCGCATCAC---------CAANGCTTCGGCACATAGTTTTAGCCCCG 371 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| ||| Sbjct 372 TTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGG 431 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| ||||||||||||| | |||||| || ||||||| ||||||||| | || Sbjct 432 CTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACTTAACCA 491 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 |||| ||| |||||||||| | |||||| ||||||||| Sbjct 492 TGACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 531 >seq11122 Length=782 Score = 176 bits (194), Expect = 1e-41 Identities = 290/406 (71%), Gaps = 13/406 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 |||||||| || ||| |||||||||||| ||||||||||| | || || ||| ||| Sbjct 434 CGACTACGACTTTCGTCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAACGTTGCG 375 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 | |||| |||||| |||||| |||| || |||||| | || |||||||| | Sbjct 374 CAAGGAAACCTTGGGCTTTCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTC 315 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | | ||||| || || || | || ||||| | || || Sbjct 314 AGCATTCGCACTTCCGATACCTCCAGCAGACT-TCTCAATCCACCTTCAACGGCTTACGG 256 Query 178 GACGCTCCCCTACC-CAACCACACAGGT-TGC-CAC----AGCTTCGGCGGATAACTTAA 230 ||||||| ||||| | || | | | ||| ||| |||||||| | |||| Sbjct 255 AACGCTCCTCTACCGCGTACATATAAATATGCACACCCCAAGCTTCGGTTCACTGCTTA- 197 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| | ||| ||||||| | | || || |||||||||||||||||||||||||| Sbjct 196 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 138 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| | || |||||||||| ||||| || ||||||| ||| ||||| Sbjct 137 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCCTTTCCACATGGTTTTCCACT 78 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || | || ||| ||||||||| | |||||| ||||||||| Sbjct 77 TAGCAGTGAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 32 >seq14093 Length=47550 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 18299 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 18243 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 18242 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 18183 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 18182 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 18123 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 18122 GTTTCCCTCTCG 18111 >seq5227 Length=304 Score = 145 bits (160), Expect = 2e-32 Identities = 137/175 (78%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT----- 261 || ||||||||| | || ||| ||||||| |||||| ||||||| | | ||| Sbjct 117 CCTCAGCTTCGGTGCATGGCTTCAGCCCCGTTACATTTTCGGCGCAAAGACCCTTATCTA 176 Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 |||||||||||| |||||| ||||| || |||||||||||| |||||||| |||||||| Sbjct 177 GACCAGTGAGCTGTTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGTT 236 Query 322 GTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTG 376 || | | | | |||||||||||||||| || || |||| ||| ||||||||| Sbjct 237 GTTTTGGGATCCTCACATCCTTTCCCACTTAGCCATGACTTGGGGACCTTAGCTG 291 >seq7050 Length=3442 Score = 80.6 bits (88), Expect = 6e-13 Identities = 166/238 (70%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 106 CGCTACTCATGCCTGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTT 165 || ||||||||||| |||| || | | | ||||||||| || | ||| || ||| Sbjct 2589 CGTTACTCATGCCTACATTTTCTTTTCTAGAAGCTCCACCACCCATT-ACCAGGTGACTT 2531 Query 166 CACCACTGACACGACGCTCCCCTACCCAACCA-CACAGGTTG----CCACAGCTTCGGCG 220 | | | | | | ||||||||||| || || | | || ||| |||||||| Sbjct 2530 CTGCGCCGCTAGAATGCTCCCCTACCAGTACATCAGAAGATGTAATCCATAGCTTCGGTA 2471 Query 221 GATAA-CTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACG 279 ||| |||| |||| || ||||| || | ||| || ||| |||||||| ||||| Sbjct 2470 -ATATGCTTATGCCCGATTA--TTATCCATGCCGGATCGCTCGACTAGTGAGCTGTTACG 2414 Query 280 CACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCA 336 ||||| || || || | ||||||||||||| ||| |||| | |||| | |||| |||| Sbjct 2413 CACTCGTTAAATGAATAGCTGCTTCCAAGCTAACATCCTAGCTGTCAAAGCAA-TCCA 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177424360960