Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq9526 235 5e-60 seq7100 156 4e-36 seq11276 147 2e-33 seq10559 129 5e-28 seq7050 125 6e-27 seq6090 122 7e-26 seq890 113 4e-23 seq5578 75.2 9e-12 >seq9526 Length=626 Score = 235 bits (260), Expect = 5e-60 Identities = 148/160 (93%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 351 CGAGTTGCAGAGAACAATCCGAACTACGATCGGTTTTCTGGGATTAGCTCCCCCTCGCGG 410 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 411 GTTGGCGACCCTCTGTTCCGACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 470 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||||||||||||||||||||||||||||| Sbjct 471 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 510 >seq7100 Length=3288 Score = 156 bits (172), Expect = 4e-36 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| |||||||||||||||| |||| || ||||||| || |||| Sbjct 920 TCGAGTTGCAGACTCCAATCCGGACTACGATCGGCTTTTTGAGATTAGCATCCTATCGCT 861 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||| |||| ||||||||| ||||||| |||||| || ||||||||| Sbjct 860 AGGTAGCAACCCTTTGTACCGACCATTGTAGCACGTGTGTAGCCCTGGCCGTAAGGGCCA 801 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||| ||||| ||||||||| ||||||||| Sbjct 800 TGATGACTTGACGTCGTCCCCGCCTTCCTCCAGTTTGTCAC 760 >seq11276 Length=759 Score = 147 bits (162), Expect = 2e-33 Identities = 108/126 (86%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||||||||||| ||| || |||| || | || ||||||||| |||||||||| ||| Sbjct 750 TTTCTGGGATTGGCTTACCGTCGCCGGCTTGCAGCCCTCTGTCCCTACCATTGTAGTACG 691 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||||| || |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 690 TGTGTAGCCCTGGCCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGGTT 631 Query 156 TGTCAC 161 |||||| Sbjct 630 TGTCAC 625 >seq10559 Length=871 Score = 129 bits (142), Expect = 5e-28 Identities = 126/161 (78%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||||| ||| | | |||||| | |||| ||||| ||| | Sbjct 869 TCGAGTTGCAGAGAACAATCCGAACTGAGGCA-ACTTTCCGAGATTCGCTCCGCCTTACA 811 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||| |||| | |||||||| ||||||| |||| ||||||||||||| Sbjct 810 GCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA 751 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||||||||||||||||| || | |||| Sbjct 750 TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 710 >seq7050 Length=3442 Score = 125 bits (138), Expect = 6e-27 Identities = 124/158 (78%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||| ||| |||| | ||| || |||| || | | || Sbjct 546 TCGAGTTGCAGACTCCAATCCGAACTGAGATA-AGTTTTTGAGATTCGCATCTTATTGCT 488 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || |||||||||| |||||||||| ||||||| ||||| | | |||||||| Sbjct 487 AAGTAGCTGCCCTCTGTACTTACCATTGTAGCACGTGTGTAGCCCAAGACGTAAGGGCCG 428 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTG 157 ||| ||||||||||| |||||||||||||| ||||||| Sbjct 427 TGATGACTTGACGTCGTCCCCACCTTCCTCGCGGTTTG 390 >seq6090 Length=481770 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 13730 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 13671 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 13670 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 13611 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 13610 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 13571 >seq890 Length=732597 Score = 113 bits (124), Expect = 4e-23 Identities = 123/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || ||||||| ||| | ||| | ||| ||| ||||||| ||||| || Sbjct 580149 CGAGTTGCAGCCTGCAATCCGAACTGAGGATG-AGTTTTTGGAGTTAGCTCACCCTCACG 580091 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || |||| ||| | |||||||| ||||||| | || |||||||| || Sbjct 580090 GGATCACGACCCTTTGTCTCGGCCATTGTAGCACGTGTGTCGTCCAGTGCATAAGGGGCA 580031 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | | ||||||||||||||| |||||||||| || || |||| Sbjct 580030 TAATGACTTGACGTCATCCTCACCTTCCTCTGGCTTATCAC 579990 >seq5578 Length=1651365 Score = 75.2 bits (82), Expect = 9e-12 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 111 ATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||| |||||||||||||||||||||||||||| || | |||| Sbjct 509110 ATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 509160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415939892550