Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq10559 244 2e-62 seq7100 188 1e-45 seq6090 163 5e-38 seq2083 150 3e-34 seq11276 138 2e-30 >seq10559 Length=871 Score = 244 bits (270), Expect = 2e-62 Identities = 228/290 (79%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||| | | |||||| | ||||||||||||||||||| Sbjct 320 CCCACGCTTTCGCACCTCAGCGTCAATACCAGTCCAGTGAGCCGCCTTCGCCACTGGTGT 261 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || |||| ||||||||| |||||||| |||||| ||||||||| | ||||||| | | Sbjct 260 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTCACCTCTCCTGGAT 201 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| | |||| ||||| |||| | ||||||| | | |||||| ||| ||| Sbjct 200 TCAAGCGATGCAGTATCAAAGGCAGTTCCGGAGTTGAGCTCCGGGCTTTCACCTCTAACT 141 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| || |||||| |||| ||| |||| | |||||| || ||| || Sbjct 140 TACAAAGCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCTCCCTCCG 81 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||||||| | |||| Sbjct 80 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGAGCTTATTCTCCCGGTA 31 >seq7100 Length=3288 Score = 188 bits (208), Expect = 1e-45 Identities = 211/282 (75%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| || Sbjct 370 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 311 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||||| ||| Sbjct 310 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTCCCACAC 251 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || || |||| || |||||| ||| ||| | | |||||||| ||||| Sbjct 250 TCTAGCTAACCAGTATCGAATGCAATTCCCAAGTTAAGCTCGGGGATTTCACATTTGACT 191 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| ||| |||||| |||| |||||||| |||||||||| ||| | Sbjct 190 TAATTAGCCGCCTACGCGCGCTTTACGCCCAGTAAATCCGATTAACGCTTGCACCCTCTG 131 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||||||||| ||||||||| |||||||| Sbjct 130 TATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC 89 >seq6090 Length=481770 Score = 163 bits (180), Expect = 5e-38 Identities = 207/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 13177 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 13118 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 13117 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 13058 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 13057 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 12998 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 12997 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 12938 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 12937 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 12893 >seq2083 Length=391 Score = 150 bits (166), Expect = 3e-34 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 71 ATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGC---ACTCAAGAA 127 ||||| ||||||||||||||||| ||||| ||| || || | |||||||| Sbjct 391 ATCTAAGCATTTCACCGCTACACTACACATTCCA---GCCACTGCAACCTCACTCAAGAC 335 Query 128 AAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTC 187 |||||| |||| |||| | ||| ||| | | |||||| |||||| Sbjct 334 TAACAGTATCAATGGCAGTTCCTTAGTTAAGCTAAGGGATTTCACCACTGACTGATTAAT 275 Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||| Sbjct 274 CCGCCTACGGACCCTTTAAACCCAATAAATCCGGATAACGCTTGCACCCTCCGTATTACC 215 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||| ||||||||| |||||||| Sbjct 214 GCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 180 >seq11276 Length=759 Score = 138 bits (152), Expect = 2e-30 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59 |||| ||||||| |||||||||||||| ||||| || ||||||||||||||| || Sbjct 238 CCCATGCTTTCGTGCCTCAGCGTCAGTGT-TGTCCCAGATGGCCGCCTTCGCCACTGATG 180 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| || |||||||||||||||||||||| |||||||| ||||| || Sbjct 179 TTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCACCATCCTCTGACACA 120 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 ||| || |||| || | ||| |||||||||| | ||||||| | ||| Sbjct 119 CTCTAGCTCGCCAGTATCCATTGCCATTCCCAGGTTGAGCCCGGGGCTTTCACAACAGAC 60 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGC 232 || | |||||||| | | |||||| |||| ||| |||| |||||||||| Sbjct 59 TTAACGAACCGCCTACGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828680247465