Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq10559 244 2e-62
seq7100 188 1e-45
seq6090 163 5e-38
seq2083 150 3e-34
seq11276 138 2e-30
>seq10559
Length=871
Score = 244 bits (270), Expect = 2e-62
Identities = 228/290 (79%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||||||||||| ||||||||||| | | |||||| | |||||||||||||||||||
Sbjct 320 CCCACGCTTTCGCACCTCAGCGTCAATACCAGTCCAGTGAGCCGCCTTCGCCACTGGTGT 261
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|| |||| ||||||||| |||||||| |||||| ||||||||| | ||||||| | |
Sbjct 260 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTCACCTCTCCTGGAT 201
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
||||| | |||| ||||| |||| | ||||||| | | |||||| ||| |||
Sbjct 200 TCAAGCGATGCAGTATCAAAGGCAGTTCCGGAGTTGAGCTCCGGGCTTTCACCTCTAACT 141
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | |||||||| || |||||| |||| ||| |||| | |||||| || ||| ||
Sbjct 140 TACAAAGCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAACAACGCTAGCTCCCTCCG 81
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||| ||||||||| |||||||| | ||||
Sbjct 80 TATTACCGCGGCTGCTGGCACGGAGTTAGCCGGAGCTTATTCTCCCGGTA 31
>seq7100
Length=3288
Score = 188 bits (208), Expect = 1e-45
Identities = 211/282 (75%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| | ||||||| || |||| | | |||||||| ||| ||
Sbjct 370 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 311
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| |||| || |||||||| ||||||||| |||||| | ||||||| |||
Sbjct 310 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTCCCACAC 251
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || || |||| || |||||| ||| ||| | | |||||||| |||||
Sbjct 250 TCTAGCTAACCAGTATCGAATGCAATTCCCAAGTTAAGCTCGGGGATTTCACATTTGACT 191
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | |||||||| ||| |||||| |||| |||||||| |||||||||| ||| |
Sbjct 190 TAATTAGCCGCCTACGCGCGCTTTACGCCCAGTAAATCCGATTAACGCTTGCACCCTCTG 131
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282
||||||||||||||||||||| ||||||||| ||||||||
Sbjct 130 TATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC 89
>seq6090
Length=481770
Score = 163 bits (180), Expect = 5e-38
Identities = 207/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 13177 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 13118
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||| ||
Sbjct 13117 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 13058
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 13057 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 12998
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||
Sbjct 12997 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 12938
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 12937 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 12893
>seq2083
Length=391
Score = 150 bits (166), Expect = 3e-34
Identities = 163/215 (76%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 71 ATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGC---ACTCAAGAA 127
||||| ||||||||||||||||| ||||| ||| || || | ||||||||
Sbjct 391 ATCTAAGCATTTCACCGCTACACTACACATTCCA---GCCACTGCAACCTCACTCAAGAC 335
Query 128 AAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTC 187
|||||| |||| |||| | ||| ||| | | |||||| ||||||
Sbjct 334 TAACAGTATCAATGGCAGTTCCTTAGTTAAGCTAAGGGATTTCACCACTGACTGATTAAT 275
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 274 CCGCCTACGGACCCTTTAAACCCAATAAATCCGGATAACGCTTGCACCCTCCGTATTACC 215
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282
||||||||||||||| ||||||||| ||||||||
Sbjct 214 GCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 180
>seq11276
Length=759
Score = 138 bits (152), Expect = 2e-30
Identities = 172/233 (74%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCC-AGCAATCCGCCTTCGCCACTGGTG 59
|||| ||||||| |||||||||||||| ||||| || ||||||||||||||| ||
Sbjct 238 CCCATGCTTTCGTGCCTCAGCGTCAGTGT-TGTCCCAGATGGCCGCCTTCGCCACTGATG 180
Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119
||||||| || |||||||||||||||||||||| |||||||| ||||| ||
Sbjct 179 TTCCTCCCGATCTCTACGCATTTCACCGCTACACCGGGAATTCCACCATCCTCTGACACA 120
Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179
||| || |||| || | ||| |||||||||| | ||||||| | |||
Sbjct 119 CTCTAGCTCGCCAGTATCCATTGCCATTCCCAGGTTGAGCCCGGGGCTTTCACAACAGAC 60
Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGC 232
|| | |||||||| | | |||||| |||| ||| |||| ||||||||||
Sbjct 59 TTAACGAACCGCCTACGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGC 7
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828680247465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |