Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq8932 140 2e-31
seq10345 136 3e-30
seq12318 132 3e-29
>seq8932
Length=1192
Score = 140 bits (154), Expect = 2e-31
Identities = 116/139 (83%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct 683 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 624
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| | |||||| | ||| ||||||| |||||| | |||||||| || ||| |
Sbjct 623 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCT 564
Query 121 CACTAC-GATTTCCGACCG 138
|| || ||||||||||||
Sbjct 563 -ACGACCGATTTCCGACCG 546
>seq10345
Length=916
Score = 136 bits (150), Expect = 3e-30
Identities = 115/141 (82%), Gaps = 8/141 (6%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct 564 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 623
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| | |||||| | |||| | ||||||| | |||| | |||||||| || |||
Sbjct 624 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 681
Query 121 CACTAC----GATTTCCGACC 137
|||| |||||||||||
Sbjct 682 --CTACGCGTGATTTCCGACC 700
>seq12318
Length=640
Score = 132 bits (146), Expect = 3e-29
Identities = 100/118 (85%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| ||||||||||||||||||| | | |||||||||||||||| ||||
Sbjct 198 TACCTTTTATCCTATGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTG 139
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||||| ||| || | |||| | |||| || |||||||| ||| ||||||| ||||
Sbjct 138 CTTTCGCACCTGATCGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACT 81
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351950780500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |