Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq8932 150 2e-34 seq10345 141 9e-32 seq12318 125 7e-27 seq14093 75.2 1e-11 >seq8932 Length=1192 Score = 150 bits (166), Expect = 2e-34 Identities = 127/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 671 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 612 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| |||||||||||||| |||| |||| || ||| | |||| || Sbjct 611 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTC 552 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| |||||||| ||||||||||| Sbjct 551 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTA 516 >seq10345 Length=916 Score = 141 bits (156), Expect = 9e-32 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 576 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 635 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || ||||||||| |||| |||| |||| || ||| | | ||| || Sbjct 636 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 695 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | ||| |||||||| ||||||||||| Sbjct 696 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 731 >seq12318 Length=640 Score = 125 bits (138), Expect = 7e-27 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 26 TGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCT 85 ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| | Sbjct 184 TGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTGCTTTCGCACCTGAT 125 Query 86 CGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCG 145 ||| || |||| ||||||||| ||||||||||| |||| | |||| | || Sbjct 124 CGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACTCTACGCACGGTTACCA 65 Query 146 ACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | |||| | || ||||| | ||||||||| Sbjct 64 AGCGTGCTGAGGGTACCTTTGAAAGCCTCCGTTA 31 >seq14093 Length=47550 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 19684 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 19625 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 19624 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 19576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473531569980