Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq8932 150 2e-34
seq10345 141 9e-32
seq12318 125 7e-27
seq14093 75.2 1e-11
>seq8932
Length=1192
Score = 150 bits (166), Expect = 2e-34
Identities = 127/156 (81%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||
Sbjct 671 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 612
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| ||| |||||||||||||| |||| |||| || ||| | |||| ||
Sbjct 611 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTC 552
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | ||| |||||||| |||||||||||
Sbjct 551 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTA 516
>seq10345
Length=916
Score = 141 bits (156), Expect = 9e-32
Identities = 125/156 (80%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||
Sbjct 576 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 635
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| || ||||||||| |||| |||| |||| || ||| | | ||| ||
Sbjct 636 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 695
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||| | | ||| |||||||| |||||||||||
Sbjct 696 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 731
>seq12318
Length=640
Score = 125 bits (138), Expect = 7e-27
Identities = 120/154 (78%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 26 TGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCT 85
||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
Sbjct 184 TGAGCGATGGCCCTTCCATACGGAACCACCGGATCACTATGTCCTGCTTTCGCACCTGAT 125
Query 86 CGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCG 145
||| || |||| ||||||||| ||||||||||| |||| | |||| | ||
Sbjct 124 CGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACTCTACGCACGGTTACCA 65
Query 146 ACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
| |||| | || ||||| | |||||||||
Sbjct 64 AGCGTGCTGAGGGTACCTTTGAAAGCCTCCGTTA 31
>seq14093
Length=47550
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 19684 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 19625
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 19624 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 19576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473531569980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |