Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq12318 307 2e-81 seq8932 271 1e-70 seq10345 242 6e-62 seq14093 196 8e-48 seq6726 181 2e-43 >seq12318 Length=640 Score = 307 bits (340), Expect = 2e-81 Identities = 227/265 (86%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| |||| |||| ||||| |||||| ||||||||| ||||| | |||| ||||| Sbjct 524 TTCGCACTTATATGCTTTCAGTGCTTATCTCTTCCAAACGTAGCTACTCAGCGGTGCACC 465 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| | ||||||| | |||||||||||||| || | |||||||||||||||| | || Sbjct 464 TGGCGGCACAACTGATACACCAGAGGTTTGTTCAACTCGGTCCTCTCGTACTAGAGTCAA 405 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 |||| |||||| ||| ||| ||| || ||||| |||||||||||||| |||||||||| Sbjct 404 CTCCGCTCAAACTTCTAACGATCACAACAGATAGAGACCGAACTGTCTCACGACGTTCTG 345 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 344 AACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCCAGC 285 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| ||||||||||||||| Sbjct 284 CCCAGGATGTGACGAGCCGACATCG 260 >seq8932 Length=1192 Score = 271 bits (300), Expect = 1e-70 Identities = 216/260 (83%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| |||| ||| ||||| ||| || |||| |||| Sbjct 1004 GCTTAGATGCTTTCAGCGGTTATCTTTTCCGAACATAGCTACCCGGCAATGCCACTGGCG 945 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| || ||||||||||| ||||| ||||||||||||||||| | |||| ||| Sbjct 944 TGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCT 885 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||||| || ||| ||||| | |||||||||||||||||||| ||||||||| ||||| Sbjct 884 CTCAAATCTCAAACGTCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCC 825 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||||||| || |||||| ||||||||||| |||||||||||| |||||||||||| Sbjct 824 AGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTTCAGCCCCAG 765 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 764 GATGTGATGAGCCGACATCG 745 >seq10345 Length=916 Score = 242 bits (268), Expect = 6e-62 Identities = 169/192 (88%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 84 GGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATT 143 ||| ||||||||||| ||||| | ||||||||||||||| | ||| |||||||||||| Sbjct 311 GGTACACCAGAGGTTCGTCCACTCTGGTCCTCTCGTACTAGGAGCAGATCCTCTCAAATT 370 Query 144 TCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCG 203 ||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 371 TCCAGCGCCCACGGTAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCGCG 430 Query 204 TGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGAC 263 | ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 431 TACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCTGCTTCAGCCCCAGGATGAGAT 490 Query 264 GAGCCGACATCG 275 |||||||||||| Sbjct 491 GAGCCGACATCG 502 >seq14093 Length=47550 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 20008 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 19949 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||| ||| || | ||| Sbjct 19948 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTTCTCGCAGTTCTCCCT 19889 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 19888 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 19829 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 19828 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 19769 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 19768 AGTCGACATCG 19758 >seq6726 Length=392042 Score = 181 bits (200), Expect = 2e-43 Identities = 197/260 (76%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 || |||||| |||||| ||||| ||| | || ||| || ||| | | | | |||| Sbjct 253293 CTGAGATGCTTTCAGCAGTTATCTGCTCCGTAATTGGCTACCTAGCGTTTACCGTGGGCA 253234 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||| ||| |||| ||||| |||| ||| ||||||||| ||||| ||| || |||| Sbjct 253233 CGATAACGGGTACACCGGAGGTGCGTCCTTCCTGGTCCTCTCATACTAGGGAAAGGTCCT 253174 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||| || ||||||| || ||| ||||||||||||||| |||| |||||||||| Sbjct 253173 TTCAATGCTCTAACGCCCATATCGAATATGGACCGAACTGTCTCACGACATTCTGAACCC 253114 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 |||| | || |||||||||| ||||| |||||||||||| || |||| || |||||| Sbjct 253113 AGCTTATATACCGCTTTAATGGGTGAACAACCCAACCCTTGGAACATACTACAACCCCAG 253054 Query 256 GATGAGACGAGCCGACATCG 275 | | || ||||||||||| Sbjct 253053 GTGGCGAATAGCCGACATCG 253034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780687182940