Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq12318 307 2e-81
seq8932 271 1e-70
seq10345 242 6e-62
seq14093 196 8e-48
seq6726 181 2e-43
>seq12318
Length=640
Score = 307 bits (340), Expect = 2e-81
Identities = 227/265 (86%), Gaps = 0/265 (0%)
Strand=Plus/Minus
Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70
|||| |||| |||| ||||| |||||| ||||||||| ||||| | |||| |||||
Sbjct 524 TTCGCACTTATATGCTTTCAGTGCTTATCTCTTCCAAACGTAGCTACTCAGCGGTGCACC 465
Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130
|||| | ||||||| | |||||||||||||| || | |||||||||||||||| | ||
Sbjct 464 TGGCGGCACAACTGATACACCAGAGGTTTGTTCAACTCGGTCCTCTCGTACTAGAGTCAA 405
Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190
|||| |||||| ||| ||| ||| || ||||| |||||||||||||| ||||||||||
Sbjct 404 CTCCGCTCAAACTTCTAACGATCACAACAGATAGAGACCGAACTGTCTCACGACGTTCTG 345
Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 344 AACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCCAGC 285
Query 251 CCCAGGATGAGACGAGCCGACATCG 275
||||||||| |||||||||||||||
Sbjct 284 CCCAGGATGTGACGAGCCGACATCG 260
>seq8932
Length=1192
Score = 271 bits (300), Expect = 1e-70
Identities = 216/260 (83%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75
|||||||||| |||||| ||||| |||| ||| ||||| ||| || |||| ||||
Sbjct 1004 GCTTAGATGCTTTCAGCGGTTATCTTTTCCGAACATAGCTACCCGGCAATGCCACTGGCG 945
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
||||| || ||||||||||| ||||| ||||||||||||||||| | |||| |||
Sbjct 944 TGACAACCGGAACACCAGAGGTTCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCT 885
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
||||||| || ||| ||||| | |||||||||||||||||||| ||||||||| |||||
Sbjct 884 CTCAAATCTCAAACGTCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCC 825
Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255
||||||||| || |||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 824 AGCTCGCGTACCACTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTTCAGCCCCAG 765
Query 256 GATGAGACGAGCCGACATCG 275
|||| || ||||||||||||
Sbjct 764 GATGTGATGAGCCGACATCG 745
>seq10345
Length=916
Score = 242 bits (268), Expect = 6e-62
Identities = 169/192 (88%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 84 GGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATT 143
||| ||||||||||| ||||| | ||||||||||||||| | ||| ||||||||||||
Sbjct 311 GGTACACCAGAGGTTCGTCCACTCTGGTCCTCTCGTACTAGGAGCAGATCCTCTCAAATT 370
Query 144 TCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCG 203
||| |||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 371 TCCAGCGCCCACGGTAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCGCG 430
Query 204 TGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGAC 263
| ||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 431 TACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCTGCTTCAGCCCCAGGATGAGAT 490
Query 264 GAGCCGACATCG 275
||||||||||||
Sbjct 491 GAGCCGACATCG 502
>seq14093
Length=47550
Score = 196 bits (216), Expect = 8e-48
Identities = 194/251 (77%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 20008 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 19949
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| | ||| ||| |||||||||||||| || ||| ||| || | |||
Sbjct 19948 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTTCTCGCAGTTCTCCCT 19889
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 19888 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 19829
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 19828 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 19769
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 19768 AGTCGACATCG 19758
>seq6726
Length=392042
Score = 181 bits (200), Expect = 2e-43
Identities = 197/260 (76%), Gaps = 1/260 (0%)
Strand=Plus/Minus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75
|| |||||| |||||| ||||| ||| | || ||| || ||| | | | | ||||
Sbjct 253293 CTGAGATGCTTTCAGCAGTTATCTGCTCCGTAATTGGCTACCTAGCGTTTACCGTGGGCA 253234
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
| ||| ||| |||| ||||| |||| ||| ||||||||| ||||| ||| || ||||
Sbjct 253233 CGATAACGGGTACACCGGAGGTGCGTCCTTCCTGGTCCTCTCATACTAGGGAAAGGTCCT 253174
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
|||| || ||||||| || ||| ||||||||||||||| |||| ||||||||||
Sbjct 253173 TTCAATGCTCTAACGCCCATATCGAATATGGACCGAACTGTCTCACGACATTCTGAACCC 253114
Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255
|||| | || |||||||||| ||||| |||||||||||| || |||| || ||||||
Sbjct 253113 AGCTTATATACCGCTTTAATGGGTGAACAACCCAACCCTTGGAACATACTACAACCCCAG 253054
Query 256 GATGAGACGAGCCGACATCG 275
| | || |||||||||||
Sbjct 253053 GTGGCGAATAGCCGACATCG 253034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780687182940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |