Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq6090 266 8e-69 seq7013 170 5e-40 seq2083 147 5e-33 seq1336 120 7e-25 seq11216 107 5e-21 seq9362 107 5e-21 >seq6090 Length=481770 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 12862 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 12803 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 12802 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 12743 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 12742 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 12683 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 12682 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 12634 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 12633 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 12576 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 12575 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 12530 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 12529 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 12483 >seq7013 Length=359222 Score = 170 bits (188), Expect = 5e-40 Identities = 145/179 (81%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||||| | | |||| | ||| ||| |||||||| | ||||||| | || ||||| Sbjct 119725 AGGCCTTCTACCTCCACGAGACATTGCTCTGTCAGGCTTTCACCCATTGCGGAAAATTCC 119666 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 |||||||| |||||||||||||| ||| | |||||||||| ||||| |||||| |||||| Sbjct 119665 CCACTGCTACCTCCCGTAGGAGTTTGGGCTGTGTCTCAGTCCCAGTATGGCTGATCATCC 119606 Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| ||||||||| |||| || ||| || || ||| || | |||||||||||||| Sbjct 119605 TCTCGGACCAGCTACTGATCATCACCTTAGTAAGCTATTGCCTCACCAACTAGCTAATC 119547 >seq2083 Length=391 Score = 147 bits (162), Expect = 5e-33 Identities = 107/123 (87%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| ||| || || || | ||||||| ||||||| |||||||| | ||||| Sbjct 124 TTTACAACCCATAGGGCCGTCGTCCTTCACGCGGGATGGCTGGATCAGGCTCTCACCCAT 65 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 64 TGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 5 Query 124 TGG 126 ||| Sbjct 4 TGG 2 >seq1336 Length=1448602 Score = 120 bits (132), Expect = 7e-25 Identities = 133/177 (75%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 ||||||| | | ||| |||||| ||| | ||| || ||||||||| | || ||||||| Sbjct 173607 GCCTTCTACCTCCACACGGCATTGCTCCTTCAAAATTACGCCCATTGCGGAAAATTCCCC 173666 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 ||||||| ||| ||||||| ||| | | ||||||| | | ||||| || ||||||| Sbjct 173667 ACTGCTG---CCCCTAGGAGTTTGGGCTGCATCTCAGTCCTAATGTGGTTGACCATCCTC 173723 Query 139 TCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||| | |||||| |||| ||| || || | ||| || |||||||||| ||||| Sbjct 173724 TCAAATCAGCTATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATC 173780 >seq11216 Length=109004 Score = 107 bits (118), Expect = 5e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | |||||||||| ||| |||||||||| |||||||| Sbjct 103988 TTCACGACCCGTGGGCCTTCTACCACCACGCGGCATTGCTCCATCAGGCTTTCGCCCATT 104047 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101 | | || |||||||||||||||||||||||||| ||| Sbjct 104048 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGACTCT 104084 >seq9362 Length=181282 Score = 107 bits (118), Expect = 5e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | |||||||||| ||| |||||||||| |||||||| Sbjct 6212 TTCACGACCCGTGGGCCTTCTACCACCACGCGGCATTGCTCCATCAGGCTTTCGCCCATT 6271 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101 | | || |||||||||||||||||||||||||| ||| Sbjct 6272 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGACTCT 6308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222217679040