Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq6090 266 8e-69
seq7013 170 5e-40
seq2083 147 5e-33
seq1336 120 7e-25
seq11216 107 5e-21
seq9362 107 5e-21
>seq6090
Length=481770
Score = 266 bits (294), Expect = 8e-69
Identities = 306/410 (75%), Gaps = 30/410 (7%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 12862 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 12803
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 12802 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 12743
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 12742 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 12683
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | | ||| || | || ||| ||| ||||
Sbjct 12682 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 12634
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| |||||||||| ||| | ||||||| ||||
Sbjct 12633 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 12576
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||||||||||||| ||| || || ||||
Sbjct 12575 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 12530
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 12529 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 12483
>seq7013
Length=359222
Score = 170 bits (188), Expect = 5e-40
Identities = 145/179 (81%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76
||||||||| | | |||| | ||| ||| |||||||| | ||||||| | || |||||
Sbjct 119725 AGGCCTTCTACCTCCACGAGACATTGCTCTGTCAGGCTTTCACCCATTGCGGAAAATTCC 119666
Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136
|||||||| |||||||||||||| ||| | |||||||||| ||||| |||||| ||||||
Sbjct 119665 CCACTGCTACCTCCCGTAGGAGTTTGGGCTGTGTCTCAGTCCCAGTATGGCTGATCATCC 119606
Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
|||| ||||||||| |||| || ||| || || ||| || | ||||||||||||||
Sbjct 119605 TCTCGGACCAGCTACTGATCATCACCTTAGTAAGCTATTGCCTCACCAACTAGCTAATC 119547
>seq2083
Length=391
Score = 147 bits (162), Expect = 5e-33
Identities = 107/123 (87%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
|||||||||| ||| || || || | ||||||| ||||||| |||||||| | |||||
Sbjct 124 TTTACAACCCATAGGGCCGTCGTCCTTCACGCGGGATGGCTGGATCAGGCTCTCACCCAT 65
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 64 TGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 5
Query 124 TGG 126
|||
Sbjct 4 TGG 2
>seq1336
Length=1448602
Score = 120 bits (132), Expect = 7e-25
Identities = 133/177 (75%), Gaps = 3/177 (2%)
Strand=Plus/Plus
Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78
||||||| | | ||| |||||| ||| | ||| || ||||||||| | || |||||||
Sbjct 173607 GCCTTCTACCTCCACACGGCATTGCTCCTTCAAAATTACGCCCATTGCGGAAAATTCCCC 173666
Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138
||||||| ||| ||||||| ||| | | ||||||| | | ||||| || |||||||
Sbjct 173667 ACTGCTG---CCCCTAGGAGTTTGGGCTGCATCTCAGTCCTAATGTGGTTGACCATCCTC 173723
Query 139 TCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
||| | |||||| |||| ||| || || | ||| || |||||||||| |||||
Sbjct 173724 TCAAATCAGCTATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATC 173780
>seq11216
Length=109004
Score = 107 bits (118), Expect = 5e-21
Identities = 82/97 (85%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | |||||||||| ||| |||||||||| ||||||||
Sbjct 103988 TTCACGACCCGTGGGCCTTCTACCACCACGCGGCATTGCTCCATCAGGCTTTCGCCCATT 104047
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101
| | || |||||||||||||||||||||||||| |||
Sbjct 104048 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGACTCT 104084
>seq9362
Length=181282
Score = 107 bits (118), Expect = 5e-21
Identities = 82/97 (85%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | |||||||||| ||| |||||||||| ||||||||
Sbjct 6212 TTCACGACCCGTGGGCCTTCTACCACCACGCGGCATTGCTCCATCAGGCTTTCGCCCATT 6271
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101
| | || |||||||||||||||||||||||||| |||
Sbjct 6272 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGACTCT 6308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222217679040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |