Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq6090 329 1e-87 seq2083 194 5e-47 seq7013 174 5e-41 seq1336 165 2e-38 seq10559 131 5e-28 seq7100 111 5e-22 seq11216 105 2e-20 seq9362 105 2e-20 >seq6090 Length=481770 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 12665 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 12724 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 12725 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 12784 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 12785 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 12844 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 12845 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 12904 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 12905 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 12964 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 12965 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 13006 >seq2083 Length=391 Score = 194 bits (214), Expect = 5e-47 Identities = 214/287 (75%), Gaps = 25/287 (9%) Strand=Plus/Plus Query 236 CCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGC 295 ||||| ||| |||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct 2 CCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGG 61 Query 296 ACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGT 354 |||||||| | |||||||| |||| | |||||||| || || || ||| |||| || Sbjct 62 ACAATGGGTGAGAGCCTGATCCAGCCATCCCGCGTGAAGGACGACGGCCCTATGGGTTGT 121 Query 355 AAAGCTCTGTCCTCAAGGAAGATAA---------------------TGACGGTACTTGAG 393 ||| ||| | | ||| ||||| ||| |||||| | Sbjct 122 AAACTTCTTTTGTATAGG--GATAAACCTTTCCACGTGTGGAAAGCTGAAGGTACTATAC 179 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453 || |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| Sbjct 180 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 239 Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| ||| | ||| |||||||| |||||| || || | |||| Sbjct 240 TCCGGATTTA-TTGGGTTTAAAGGGTCCGTAGGCGGATTAATCAGTC 285 >seq7013 Length=359222 Score = 174 bits (192), Expect = 5e-41 Identities = 155/194 (80%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| ||| || |||||| |||| || |||||||||| | | || Sbjct 119544 TCTGATTAGCTAGTTGGTGAGGCAATAGCTTACTAAGGTGATGATCAGTAGCTGGTCCGA 119603 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| |||| | ||| |||||||||| | |||||||||||||||||| |||||| Sbjct 119604 GAGGATGATCAGCCATACTGGGACTGAGACACAGCCCAAACTCCTACGGGAGGTAGCAGT 119663 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| || | ||||||| ||||||||| ||||| | | |||| | |||||| Sbjct 119664 GGGGAATTTTCCGCAATGGGTGAAAGCCTGACAGAGCAATGTCTCGTGGAGGTAGAAGGC 119723 Query 344 CTTCGGGTCGTAAA 357 || || |||| || Sbjct 119724 CTATGGTTCGTGAA 119737 >seq1336 Length=1448602 Score = 165 bits (182), Expect = 2e-38 Identities = 238/331 (72%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||| |||||| |||||||| ||| || | |||| || ||| ||||| |||| || Sbjct 173786 CGCGT-TGATTAACTAGTTGGCGAGGCAATAGTTTACTGAGACGATGATCAATAGCTGAT 173728 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||||||| || || ||||||| | ||||||| | | ||||||||||| | ||||| Sbjct 173727 TTGAGAGGATGGTCAACCACATTAGGACTGAGATGCAGCCCAAACTCCTA---GGGGCAG 173671 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| || ||| | ||||| |||| ||| | || Sbjct 173670 CAGTGGGGAATTTTCCGCAATGGGCGTAATTTTGAAGGAGCAATGCCGTGTGGAGGTAGA 173611 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA-AGATAATGACGGTACTTGAGGAGGA 398 |||| |||| || || ||| | || ||| | || |||||||||| | ||| | Sbjct 173610 AGGCTCATGGGTGGTGAACTTCTTTTCTAAAGAAGAGGCAATGACGGTATCTATGGAATA 173551 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| || |||||| |||| |||| || | ||||| ||| || |||||||| | Sbjct 173550 AGCATCGACTAACTTTGTGCTAGCAACCACAATAATATAGAGGATGCAAGCGTTATTCAA 173491 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 ||| | | ||||||||| || ||||||||| Sbjct 173490 AATGA-TTAGGCGTAAAGCGTCCGTAGGTGG 173461 >seq10559 Length=871 Score = 131 bits (144), Expect = 5e-28 Identities = 107/129 (83%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 371 GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGG 430 ||| ||||||||| |||| | || |||| |||||||||| ||||||||||||||||| Sbjct 16 GGATGATAATGACAGTACCGGGAGAATAAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGG 75 Query 431 TAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||||||| |||| ||||||||| | |||||||||| |||||||||| | |||||| || Sbjct 76 TAATACGGAGGGAGCTAGCGTTGTTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCGGC 134 Query 491 TTCTTAAGT 499 || ||||| Sbjct 135 TTTGTAAGT 143 >seq7100 Length=3288 Score = 111 bits (122), Expect = 5e-22 Identities = 103/128 (80%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 374 AGATAATG-ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA 432 ||||| || ||| |||| | || |||| |||||||||| |||||||||||||||||| Sbjct 68 AGATAGTGGACGTTACTCGCAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTA 127 Query 433 ATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 |||| |||| || ||||||| |||| ||||| |||||||||| | ||||||| || | Sbjct 128 ATACAGAGGGTGCAAGCGTTAATCGGATTTACT-GGGCGTAAAGCGCGCGTAGGCGGCTA 186 Query 493 CTTAAGTC 500 ||||||| Sbjct 187 ATTAAGTC 194 >seq11216 Length=109004 Score = 105 bits (116), Expect = 2e-20 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 265 TCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACG 324 |||||||||||||||||||||||||| || | |||||||| ||||||||||| ||||| | Sbjct 104080 TCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGATGGAGCAATG 104021 Query 325 CCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA 357 ||||||| | ||||||| |||||||| || Sbjct 104020 CCGCGTGGTGGTAGAAGGCCCACGGGTCGTGAA 103988 >seq9362 Length=181282 Score = 105 bits (116), Expect = 2e-20 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 265 TCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACG 324 |||||||||||||||||||||||||| || | |||||||| ||||||||||| ||||| | Sbjct 6304 TCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGATGGAGCAATG 6245 Query 325 CCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA 357 ||||||| | ||||||| |||||||| || Sbjct 6244 CCGCGTGGTGGTAGAAGGCCCACGGGTCGTGAA 6212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497376632960