Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq6090 329 1e-87
seq2083 194 5e-47
seq7013 174 5e-41
seq1336 165 2e-38
seq10559 131 5e-28
seq7100 111 5e-22
seq11216 105 2e-20
seq9362 105 2e-20
>seq6090
Length=481770
Score = 329 bits (364), Expect = 1e-87
Identities = 280/343 (82%), Gaps = 3/343 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 12665 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 12724
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 12725 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 12784
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 12785 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 12844
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
||||| |||||||| || ||| | | | ||||| |||||||||| || |||
Sbjct 12845 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 12904
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 12905 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 12964
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||||||||| || |||||||| || |||||||
Sbjct 12965 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 13006
>seq2083
Length=391
Score = 194 bits (214), Expect = 5e-47
Identities = 214/287 (75%), Gaps = 25/287 (9%)
Strand=Plus/Plus
Query 236 CCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGC 295
||||| ||| |||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 2 CCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGCAGTGAGGAATATTGG 61
Query 296 ACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGT 354
|||||||| | |||||||| |||| | |||||||| || || || ||| |||| ||
Sbjct 62 ACAATGGGTGAGAGCCTGATCCAGCCATCCCGCGTGAAGGACGACGGCCCTATGGGTTGT 121
Query 355 AAAGCTCTGTCCTCAAGGAAGATAA---------------------TGACGGTACTTGAG 393
||| ||| | | ||| ||||| ||| |||||| |
Sbjct 122 AAACTTCTTTTGTATAGG--GATAAACCTTTCCACGTGTGGAAAGCTGAAGGTACTATAC 179
Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453
|| |||| |||||||||| |||||||||||||||||||||||| |||| || |||||||
Sbjct 180 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 239
Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||||| ||| | ||| |||||||| |||||| || || | ||||
Sbjct 240 TCCGGATTTA-TTGGGTTTAAAGGGTCCGTAGGCGGATTAATCAGTC 285
>seq7013
Length=359222
Score = 174 bits (192), Expect = 5e-41
Identities = 155/194 (80%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223
|||||||||||||||||| ||| || |||||| |||| || |||||||||| | | ||
Sbjct 119544 TCTGATTAGCTAGTTGGTGAGGCAATAGCTTACTAAGGTGATGATCAGTAGCTGGTCCGA 119603
Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283
|||| ||||| |||| | ||| |||||||||| | |||||||||||||||||| ||||||
Sbjct 119604 GAGGATGATCAGCCATACTGGGACTGAGACACAGCCCAAACTCCTACGGGAGGTAGCAGT 119663
Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343
||||||| || | ||||||| ||||||||| ||||| | | |||| | ||||||
Sbjct 119664 GGGGAATTTTCCGCAATGGGTGAAAGCCTGACAGAGCAATGTCTCGTGGAGGTAGAAGGC 119723
Query 344 CTTCGGGTCGTAAA 357
|| || |||| ||
Sbjct 119724 CTATGGTTCGTGAA 119737
>seq1336
Length=1448602
Score = 165 bits (182), Expect = 2e-38
Identities = 238/331 (72%), Gaps = 6/331 (2%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
||||| |||||| |||||||| ||| || | |||| || ||| ||||| |||| ||
Sbjct 173786 CGCGT-TGATTAACTAGTTGGCGAGGCAATAGTTTACTGAGACGATGATCAATAGCTGAT 173728
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
||||||| || || ||||||| | ||||||| | | ||||||||||| | |||||
Sbjct 173727 TTGAGAGGATGGTCAACCACATTAGGACTGAGATGCAGCCCAAACTCCTA---GGGGCAG 173671
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| || ||| | ||||| |||| ||| | ||
Sbjct 173670 CAGTGGGGAATTTTCCGCAATGGGCGTAATTTTGAAGGAGCAATGCCGTGTGGAGGTAGA 173611
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA-AGATAATGACGGTACTTGAGGAGGA 398
|||| |||| || || ||| | || ||| | || |||||||||| | ||| |
Sbjct 173610 AGGCTCATGGGTGGTGAACTTCTTTTCTAAAGAAGAGGCAATGACGGTATCTATGGAATA 173551
Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458
||| || |||||| |||| |||| || | ||||| ||| || |||||||| |
Sbjct 173550 AGCATCGACTAACTTTGTGCTAGCAACCACAATAATATAGAGGATGCAAGCGTTATTCAA 173491
Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489
||| | | ||||||||| || |||||||||
Sbjct 173490 AATGA-TTAGGCGTAAAGCGTCCGTAGGTGG 173461
>seq10559
Length=871
Score = 131 bits (144), Expect = 5e-28
Identities = 107/129 (83%), Gaps = 1/129 (1%)
Strand=Plus/Plus
Query 371 GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGG 430
||| ||||||||| |||| | || |||| |||||||||| |||||||||||||||||
Sbjct 16 GGATGATAATGACAGTACCGGGAGAATAAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGG 75
Query 431 TAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490
||||||| |||| ||||||||| | |||||||||| |||||||||| | |||||| ||
Sbjct 76 TAATACGGAGGGAGCTAGCGTTGTTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCGGC 134
Query 491 TTCTTAAGT 499
|| |||||
Sbjct 135 TTTGTAAGT 143
>seq7100
Length=3288
Score = 111 bits (122), Expect = 5e-22
Identities = 103/128 (80%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 374 AGATAATG-ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTA 432
||||| || ||| |||| | || |||| |||||||||| ||||||||||||||||||
Sbjct 68 AGATAGTGGACGTTACTCGCAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTA 127
Query 433 ATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492
|||| |||| || ||||||| |||| ||||| |||||||||| | ||||||| || |
Sbjct 128 ATACAGAGGGTGCAAGCGTTAATCGGATTTACT-GGGCGTAAAGCGCGCGTAGGCGGCTA 186
Query 493 CTTAAGTC 500
|||||||
Sbjct 187 ATTAAGTC 194
>seq11216
Length=109004
Score = 105 bits (116), Expect = 2e-20
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 265 TCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACG 324
|||||||||||||||||||||||||| || | |||||||| ||||||||||| ||||| |
Sbjct 104080 TCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGATGGAGCAATG 104021
Query 325 CCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA 357
||||||| | ||||||| |||||||| ||
Sbjct 104020 CCGCGTGGTGGTAGAAGGCCCACGGGTCGTGAA 103988
>seq9362
Length=181282
Score = 105 bits (116), Expect = 2e-20
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 265 TCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACG 324
|||||||||||||||||||||||||| || | |||||||| ||||||||||| ||||| |
Sbjct 6304 TCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGATGGAGCAATG 6245
Query 325 CCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAA 357
||||||| | ||||||| |||||||| ||
Sbjct 6244 CCGCGTGGTGGTAGAAGGCCCACGGGTCGTGAA 6212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497376632960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |