Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq10559 441 2e-121 seq7100 288 2e-75 seq6090 277 4e-72 seq11276 260 3e-67 seq2083 165 2e-38 seq7050 84.2 5e-14 >seq10559 Length=871 Score = 441 bits (488), Expect = 2e-121 Identities = 336/396 (85%), Gaps = 1/396 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| ||||||||| | || Sbjct 43 AAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGAGCTAGCGTTGTTCG 102 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| | |||||| || || ||||| ||||||||||| | | Sbjct 103 GAATTACTGGGCGTAAAGCGCACGTAGGCGGCTTTGTAAGTTAGAGGTGAAAGCCCGGAG 162 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||| |||| ||||| ||||| |||||| ||| || | |||||| || |||||||| Sbjct 163 CTCAACTCCGGAACTGCCTTTGATACTGCATCGCTTGAATCCAGGAGAGGTGAGTGGAAT 222 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||| ||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct 223 TCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGGCGAAGGCGGCTC 282 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||||||| | |||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 283 ACTGGACTGGTATTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 342 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 ||||||||||||||||||||||||| ||||| |||| |||| | | ||||| |||| Sbjct 343 TGGTAGTCCACGCCGTAAACGATGATAACTAGCTGTCCGGGCAC-TTGGTGCTTGGGTGG 401 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| |||||| ||||| ||| ||||||||||| Sbjct 402 CGCAGCTAACGCATTAAGTTATCCGCCTGGGGAGTA 437 >seq7100 Length=3288 Score = 288 bits (318), Expect = 2e-75 Identities = 302/396 (76%), Gaps = 1/396 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||| || Sbjct 93 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCG 152 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||||||||||||||| | ||||||| || | |||||||| | |||||| | | Sbjct 153 GATTTACTGGGCGTAAAGCGCGCGTAGGCGGCTAATTAAGTCAAATGTGAAATCCCCGAG 212 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| || | ||| || || |||| ||||||||| |||| || |||||||| Sbjct 213 CTTAACTTGGGAATTGCATTCGATACTGGTTAGCTAGAGTGTGGGAGAGGAGAGTGGAAT 272 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | |||||| |||||||| || |||| | | |||||| ||| |||||||| ||| Sbjct 273 TTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTC 332 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| || ||| ||| | ||||||| |||||||| ||| ||||||||||||| Sbjct 333 TCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGGATTAGATACCC 392 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||| ||||||||||||| |||||| || ||||| | || ||| ||| Sbjct 393 TGGTAGTCCATGCCGTAAACGATGTCTACTAGCCGTTGGGGCCTTTGAG-GCTTTAGTGG 451 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||||| ||||||| || ||||||||||| Sbjct 452 CGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTA 487 >seq6090 Length=481770 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 12897 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 12956 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 12957 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 13016 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 13017 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 13076 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 13077 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 13136 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 13137 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 13196 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 13197 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 13255 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 13256 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 13300 >seq11276 Length=759 Score = 260 bits (288), Expect = 3e-67 Identities = 228/284 (80%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 54 AGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 |||| || ||||||| |||||||||||||||||||| ||||||||| |||| |||||| Sbjct 2 AGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTCGTTAAGT 61 Query 114 CAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTG 173 | | ||||||| | ||||||||| || | || | || |||| | ||||||||| Sbjct 62 CTGTTGTGAAAGCCCCGGGCTCAACCTGGGAATGGCAATGGATACTGGCGAGCTAGAGTG 121 Query 174 CAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACA 233 || || |||||||||| |||||||||||||||||||||| || ||||||||| Sbjct 122 TGTCAGAGGATGGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAACA 181 Query 234 CCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAG 293 |||||||||||||||| |||| |||||| ||||||| ||||||| ||||||| Sbjct 182 TCAGTGGCGAAGGCGGCCATCTGGGACAACACTGACGCTGAGGCACGAAAGCATGGGGAG 241 Query 294 CAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||| ||||||||||||||||||||||| |||||||||||||| Sbjct 242 CGAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 285 >seq2083 Length=391 Score = 165 bits (182), Expect = 2e-38 Identities = 165/212 (78%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||||||| Sbjct 184 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCG 243 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||| |||| |||||||| |||||| || || | |||||| ||||||| | | | Sbjct 244 GATTTATTGGGTTTAAAGGGTCCGTAGGCGGATTAATCAGTCAGTGGTGAAATCCCTTAG 303 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG----AGGGGCAAGTG 188 || ||| || ||||| |||| |||| | || ||||| ||| || ||| || Sbjct 304 CTTAACTAAGGAACTGCCATTGATACTGTTAGTCTTGAGTG-AGGTTGCAGTGGC---TG 359 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGAT 220 |||| ||||||||||||||||||| ||||| Sbjct 360 GAATGTGTAGTGTAGCGGTGAAATGCTTAGAT 391 >seq7050 Length=3442 Score = 84.2 bits (92), Expect = 5e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 288 GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203020542720