Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq10559 441 2e-121
seq7100 288 2e-75
seq6090 277 4e-72
seq11276 260 3e-67
seq2083 165 2e-38
seq7050 84.2 5e-14
>seq10559
Length=871
Score = 441 bits (488), Expect = 2e-121
Identities = 336/396 (85%), Gaps = 1/396 (0%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| |||||||||| |||||||||||||||||||||||| |||| ||||||||| | ||
Sbjct 43 AAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGAGCTAGCGTTGTTCG 102
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||||||||||||||||| | |||||| || || ||||| ||||||||||| | |
Sbjct 103 GAATTACTGGGCGTAAAGCGCACGTAGGCGGCTTTGTAAGTTAGAGGTGAAAGCCCGGAG 162
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192
|||||| |||| ||||| ||||| |||||| ||| || | |||||| || ||||||||
Sbjct 163 CTCAACTCCGGAACTGCCTTTGATACTGCATCGCTTGAATCCAGGAGAGGTGAGTGGAAT 222
Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252
||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 223 TCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGGCGAAGGCGGCTC 282
Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312
|||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 283 ACTGGACTGGTATTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 342
Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372
||||||||||||||||||||||||| ||||| |||| |||| | | ||||| ||||
Sbjct 343 TGGTAGTCCACGCCGTAAACGATGATAACTAGCTGTCCGGGCAC-TTGGTGCTTGGGTGG 401
Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
|||||| |||||| ||||| ||| |||||||||||
Sbjct 402 CGCAGCTAACGCATTAAGTTATCCGCCTGGGGAGTA 437
>seq7100
Length=3288
Score = 288 bits (318), Expect = 2e-75
Identities = 302/396 (76%), Gaps = 1/396 (0%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| |||||||||| |||||||||||||||||||||| |||| || ||||||| ||
Sbjct 93 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCG 152
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|| ||||||||||||||| | ||||||| || | |||||||| | |||||| | |
Sbjct 153 GATTTACTGGGCGTAAAGCGCGCGTAGGCGGCTAATTAAGTCAAATGTGAAATCCCCGAG 212
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192
|| ||| || | ||| || || |||| ||||||||| |||| || ||||||||
Sbjct 213 CTTAACTTGGGAATTGCATTCGATACTGGTTAGCTAGAGTGTGGGAGAGGAGAGTGGAAT 272
Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252
| | |||||| |||||||| || |||| | | |||||| ||| |||||||| |||
Sbjct 273 TTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTC 332
Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312
|||| || ||| ||| | ||||||| |||||||| ||| |||||||||||||
Sbjct 333 TCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGGATTAGATACCC 392
Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372
|||||||||| ||||||||||||| |||||| || ||||| | || ||| |||
Sbjct 393 TGGTAGTCCATGCCGTAAACGATGTCTACTAGCCGTTGGGGCCTTTGAG-GCTTTAGTGG 451
Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
|||||| ||||| ||||||| || |||||||||||
Sbjct 452 CGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTA 487
>seq6090
Length=481770
Score = 277 bits (306), Expect = 4e-72
Identities = 306/405 (76%), Gaps = 2/405 (0%)
Strand=Plus/Plus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|| ||| |||| ||||||||| |||||||||||||||||||||| ||| || |||
Sbjct 12897 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 12956
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||||| || ||||||| | || |||
Sbjct 12957 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 13016
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | |||||||||| || || | |||||| | ||| |||| | | |||||||
Sbjct 13017 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 13076
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||| | ||| |||||||||||||||||| || | | |||||||| ||||||
Sbjct 13077 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 13136
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
|| |||||| | | |||||||||||| ||||||| ||||||| || |||||
Sbjct 13137 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 13196
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363
|||||||| ||||||| ||||||||||||| |||||||| | | | ||| || |
Sbjct 13197 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 13255
Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | |||| | ||| ||||| ||||||| || |||||||||||
Sbjct 13256 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 13300
>seq11276
Length=759
Score = 260 bits (288), Expect = 3e-67
Identities = 228/284 (80%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 54 AGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113
|||| || ||||||| |||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 2 AGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTCGTTAAGT 61
Query 114 CAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTG 173
| | ||||||| | ||||||||| || | || | || |||| | |||||||||
Sbjct 62 CTGTTGTGAAAGCCCCGGGCTCAACCTGGGAATGGCAATGGATACTGGCGAGCTAGAGTG 121
Query 174 CAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACA 233
|| || |||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 122 TGTCAGAGGATGGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAACA 181
Query 234 CCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAG 293
|||||||||||||||| |||| |||||| ||||||| ||||||| |||||||
Sbjct 182 TCAGTGGCGAAGGCGGCCATCTGGGACAACACTGACGCTGAGGCACGAAAGCATGGGGAG 241
Query 294 CAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 242 CGAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 285
>seq2083
Length=391
Score = 165 bits (182), Expect = 2e-38
Identities = 165/212 (78%), Gaps = 8/212 (4%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| |||||||||| |||||||||||||||||||||||| |||| || |||||||||||
Sbjct 184 AAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTATCCG 243
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|| ||| |||| |||||||| |||||| || || | |||||| ||||||| | | |
Sbjct 244 GATTTATTGGGTTTAAAGGGTCCGTAGGCGGATTAATCAGTCAGTGGTGAAATCCCTTAG 303
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG----AGGGGCAAGTG 188
|| ||| || ||||| |||| |||| | || ||||| ||| || ||| ||
Sbjct 304 CTTAACTAAGGAACTGCCATTGATACTGTTAGTCTTGAGTG-AGGTTGCAGTGGC---TG 359
Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGAT 220
|||| ||||||||||||||||||| |||||
Sbjct 360 GAATGTGTAGTGTAGCGGTGAAATGCTTAGAT 391
>seq7050
Length=3442
Score = 84.2 bits (92), Expect = 5e-14
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 288 GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 49
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203020542720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |