Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq11782 455 6e-126 seq7215 313 5e-83 seq7136 313 5e-83 seq1592 313 5e-83 >seq11782 Length=94184 Score = 455 bits (504), Expect = 6e-126 Identities = 287/309 (93%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | |||||||| | ||| |||||||||| Sbjct 93384 GAACGAGACCTTAACCTGCTAAATAGCCCGTATTGCTTTGGCAGTACGCAGGCTTCTTAG 93443 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 93444 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 93503 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||| Sbjct 93504 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAGCGAGT--ACCTCCTTGGCCG 93561 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 93562 GAAGGCCCGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 93621 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 93622 CTCTTCAACGAGGAATCCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTG 93681 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 93682 CCCTTTGTA 93690 Score = 313 bits (346), Expect = 5e-83 Identities = 261/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 82315 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 82374 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 82375 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 82433 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 82434 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 82493 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 82494 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 82552 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 82553 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 82612 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 82613 CCTGCCCTTTGTA 82625 >seq7215 Length=344122 Score = 313 bits (346), Expect = 5e-83 Identities = 261/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 9112 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 9053 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 9052 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 8994 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 8993 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 8934 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 8933 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 8875 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 8874 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 8815 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 8814 CCTGCCCTTTGTA 8802 >seq7136 Length=2357723 Score = 313 bits (346), Expect = 5e-83 Identities = 261/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 1380814 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 1380873 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 1380874 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 1380932 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 1380933 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 1380992 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 1380993 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 1381051 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 1381052 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 1381111 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 1381112 CCTGCCCTTTGTA 1381124 Score = 313 bits (346), Expect = 5e-83 Identities = 261/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 1390112 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 1390171 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 1390172 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 1390230 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 1390231 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 1390290 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 1390291 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 1390349 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 1390350 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 1390409 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 1390410 CCTGCCCTTTGTA 1390422 >seq1592 Length=28874 Score = 313 bits (346), Expect = 5e-83 Identities = 191/203 (94%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 20552 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAACGAGTA 20611 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 | | |||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 20612 CTTTTCCTTGGCCGGAAGGCTTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAG 20671 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 20672 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCAAGTCATCAGCTTGCGT 20731 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||||| Sbjct 20732 TGATTACGTCCCTGCCCTTTGTA 20754 Score = 313 bits (346), Expect = 5e-83 Identities = 261/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 28453 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 28512 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 28513 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 28571 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 28572 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 28631 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 28632 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 28690 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 28691 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 28750 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 28751 CCTGCCCTTTGTA 28763 Score = 168 bits (186), Expect = 1e-39 Identities = 101/106 (95%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| |||| ||||| || ||||||||||||||||| Sbjct 20039 GAACGAGACCTTAACCTGCTAAATAGCCCGGCCAGCTTTTGCTGGTCGCCGGCTTCTTAG 20098 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20099 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 20144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947058725120