Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq7100 414 3e-113 seq8600 379 7e-103 seq7050 316 7e-84 seq14093 183 1e-43 seq737 134 5e-29 seq6090 114 4e-23 seq12575 87.8 6e-15 seq11122 87.8 6e-15 seq5227 86.0 2e-14 >seq7100 Length=3288 Score = 414 bits (458), Expect = 3e-113 Identities = 386/483 (80%), Gaps = 8/483 (2%) Strand=Plus/Plus Query 1 TCGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 ||||||| || |||||| ||| ||||||| |||||||||||||| | |||||| ||| Sbjct 2403 TCGAGTCTTAATAGGGCGTTTAGTTGCTGGGTATAGACCCGAAACCAGGCGATCTATCCA 2462 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| ||||||| |||||||| ||||||| ||||||||||| |||||||| Sbjct 2463 TGAGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCCACTGTCGTTGAAAAG 2522 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||| Sbjct 2523 CCAGGGGATGACTTGTGGATAGGGGTGAAAGGCTAATCAAACTTGGTGATAGCTGGTTCT 2582 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237 | |||||| |||||||||||| ||||| | | || ||||| ||||||||||||||||| Sbjct 2583 CCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAAT-ACCATAGGGGGTAGAGCACTGTTT 2641 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 |||||||||||||| |||||||||||||| |||||||||||||| | || ||| | Sbjct 2642 CGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTATGAGTACT 2701 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | | |||||| || ||||||||| |||||| | |||||| || ||||| ||| Sbjct 2702 ATC-CGGGAGACAGACTGCGGGTGCTAACGTCCGTAGTCAAGAGGAAAACAATCCAGACC 2760 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||||||| |||| | || ||||| | ||||| || || || ||||| Sbjct 2761 GCCAGCTAAGGCCCCAAAATCATAGTTAAGTGGGA--AACGATGTGGGAAGGCATAGACA 2818 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| |||||||| |||||||||| | |||||||| |||||| |||||||||||| Sbjct 2819 GCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTC 2877 Query 478 GAG 480 ||| Sbjct 2878 GAG 2880 >seq8600 Length=1328 Score = 379 bits (420), Expect = 7e-103 Identities = 378/483 (78%), Gaps = 9/483 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||||||| ||||||||||||| | |||||| |||| Sbjct 871 CGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCGGGCGATCTATCCAT 812 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||| |||||||| | Sbjct 811 GGGCAGGTTGAAGGTTAGGTAACACTGACTGGAGGACCGAACCGACTACCGTTGAAAAGT 752 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| |||||| | || |||||||||||| ||| || ||| ||||||||||||| Sbjct 751 TAGCGGATGACCTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 692 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| || Sbjct 691 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTGTAGGGGGTAGAGCACTGTTTCGG 632 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTAC 299 |||||||||||| |||||||||||||| |||||||||||||| | | ||| | Sbjct 631 CTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTACAAGTGCCGAG 572 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | ||||| | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 571 CATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 514 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 |||||||||| ||| || | | | ||||| | ||||| || || ||| ||||| Sbjct 513 GTCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCTTAGACA 456 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| |||||||| |||||||||| | |||||||| |||||| |||||||||||| Sbjct 455 GCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTC 397 Query 478 GAG 480 ||| Sbjct 396 GAG 394 >seq7050 Length=3442 Score = 316 bits (350), Expect = 7e-84 Identities = 436/604 (72%), Gaps = 52/604 (9%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| || ||||||| || || ||| ||||| ||||||| |||||||||||| Sbjct 1921 CGAGTCTTAATAGGGCGATAGAGTCAGTGGTATTAGACGCGAAACCTTGTGATCTACCCA 1980 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||| | |||||||| |||||| ||||||| | | |||||||| Sbjct 1981 TGGGCAGGTTGAAGCTTTGGTAACACAAAGTGGAGGACCGAACCGGTTGACGTTGAAAAG 2040 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||||||||||||||||||| || |||||| |||||||||| || || Sbjct 2041 TCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTACT 2100 Query 180 CTCCGAAAACTATTTAGGT--AG---TGCCTCAAGTATCACCATCGGGGGTAGAGC-ACT 233 | |||||| |||||||| || | | |||||| || | |||||||| ||| Sbjct 2101 CCCCGAAATGCATTTAGGTGCAGCGTTTAGTAAAGTAT----ATTAGAGGTAGAGCTACT 2156 Query 234 GTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAG 293 | | ||| | |||| | | | | |||||| | | |||||||||||||| || | Sbjct 2157 GAT-TGGATGCGGGGGCTTCACCGCCTACCAATTCCTGACAAACTCCGAATGCTAAT-AT 2214 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 | | | || ||||||||||||||||||||||||| || |||||||| ||||| || Sbjct 2215 ATGTTTCTAGGCAGTGAGGGCATGGGTGCTAAGGTCCATGTCCGAGAGGGAAAGAACCCA 2274 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTT----AAAC---------------- 393 ||| ||||||||||| ||| |||| |||||||| |||| Sbjct 2275 GACCATCAGCTAAGGTCCCCAAATATATGCTAAGTTGAAAAAACGCGGTTGGATTGCNNN 2334 Query 394 -------------TAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCA 440 |||| || ||||||| ||||||||||||||| ||||||||||| Sbjct 2335 NNNNNNNNNNNNNNAACGCGGTTGGATTGCTTTGACAGCTAGGATGTTAGCTTGGAAGCA 2394 Query 441 GCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAA 500 || |||||||||| |||||||||||||||||||||||||| || ||| |||||||||| Sbjct 2395 GCTATTCATTTAACGAGTGCGTAACAGCTCACTAGTCGAGCGATCCGGCATGGATAATAA 2454 Query 501 TCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT-CAT-TTAT-ATG-ATCGGTAGGGGA 556 ||||| | |||| ||||||||| ||| | ||| || | ||| | ||||||||| Sbjct 2455 TCGGGCA-TAAGCATATTACCGAAGCTATGGATTACATCTTCTGATGTACTGGTAGGGGA 2513 Query 557 GCAT 560 |||| Sbjct 2514 GCAT 2517 >seq14093 Length=47550 Score = 183 bits (202), Expect = 1e-43 Identities = 323/461 (70%), Gaps = 26/461 (6%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 17803 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 17862 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 17863 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 17922 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 17923 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 17980 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 17981 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 18040 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| | || | | ||||| Sbjct 18041 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 18096 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 18097 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 18156 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || ||||||||||| Sbjct 18157 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 18212 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 18213 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 18252 >seq737 Length=443 Score = 134 bits (148), Expect = 5e-29 Identities = 121/151 (80%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| |||||||||| |||| ||| | ||||||||||||| ||||||||| |||| Sbjct 293 CGAGTCTGAACAGGGCGTTCAGTTCGTGGCTTTAGACCCGAAACCGAGTGATCTAGCCAT 352 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | ||||||||||||| |||||||| | ||||||||||||||| |||||||| Sbjct 353 GTGCAGGATGAAGGTGGGGTAACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGG 412 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 | |||||| ||||| ||||||||||||| Sbjct 413 TCTTGGATGACGTGTGGCTAGGGGTGAAAGG 443 >seq6090 Length=481770 Score = 114 bits (126), Expect = 4e-23 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 17024 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 17083 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 17084 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 17143 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 || ||||||| ||||| ||||||||||| || Sbjct 17144 AGCGGATGAGTTGTGGTTAGGGGTGAAATGC 17174 >seq12575 Length=618 Score = 87.8 bits (96), Expect = 6e-15 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 97 CCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAA 156 ||||||| | ||||||| | |||| ||||||| ||||| ||||||||||||| || Sbjct 42 CCGAACCTATGAATGTTGCAGAATTCTGGGATGAATTGTGGTAAGGGGTGAAAGGCCAAT 101 Query 157 CAAACTTGGA-AATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 | ||||| || ||||||||| ||| ||||| ||||||| |||| Sbjct 102 CTAACTTAGATGATAGCTGGTATTCTACGAAACCTATTTAAGTAG 146 >seq11122 Length=782 Score = 87.8 bits (96), Expect = 6e-15 Identities = 119/164 (73%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 317 GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAA 376 ||||||||| |||||| | ||| || || || ||| ||||||||| ||| || Sbjct 9 GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACCCACAGCTAAGGTCCCAAAT 68 Query 377 TGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGA 436 | || ||||||| || ||| | || | || ||||||| |||| ||| || | || Sbjct 69 TCACTGCTAAGTGGAA--AACCATGTGGAAAGGCAGAGACAGCCAGGAGGTTTGCCTAGA 126 Query 437 AGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| | || ||||||||||||| |||||||| ||||| Sbjct 127 AGCAGCCACCC-TTGAAAGAGTGCGTAATAGCTCACTGATCGAG 169 >seq5227 Length=304 Score = 86.0 bits (94), Expect = 2e-14 Identities = 93/121 (77%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||| ||| || | | ||||||| | || || || | | | || ||| | Sbjct 291 CAGCTAAGGTCCCCAAGTCATGGCTAAGTGGGA--AAGGATGTGAGGATCCCAAAACAAC 234 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 ||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||| | Sbjct 233 CAGGATGTTGGCTTAGAAGCAGCCAT-CATTTAAAGAAAGCGTAACAGCTCACTGGTCTA 175 Query 480 G 480 | Sbjct 174 G 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689347996160