Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq7100 414 3e-113
seq8600 379 7e-103
seq7050 316 7e-84
seq14093 183 1e-43
seq737 134 5e-29
seq6090 114 4e-23
seq12575 87.8 6e-15
seq11122 87.8 6e-15
seq5227 86.0 2e-14
>seq7100
Length=3288
Score = 414 bits (458), Expect = 3e-113
Identities = 386/483 (80%), Gaps = 8/483 (2%)
Strand=Plus/Plus
Query 1 TCGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59
||||||| || |||||| ||| ||||||| |||||||||||||| | |||||| |||
Sbjct 2403 TCGAGTCTTAATAGGGCGTTTAGTTGCTGGGTATAGACCCGAAACCAGGCGATCTATCCA 2462
Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119
|| |||| ||||||| |||||||| ||||||| ||||||||||| ||||||||
Sbjct 2463 TGAGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCCACTGTCGTTGAAAAG 2522
Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179
||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2523 CCAGGGGATGACTTGTGGATAGGGGTGAAAGGCTAATCAAACTTGGTGATAGCTGGTTCT 2582
Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTA 237
| |||||| |||||||||||| ||||| | | || ||||| |||||||||||||||||
Sbjct 2583 CCCCGAAAGCTATTTAGGTAGCGCCTCGGACGAAT-ACCATAGGGGGTAGAGCACTGTTT 2641
Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297
|||||||||||||| |||||||||||||| |||||||||||||| | || ||| |
Sbjct 2642 CGGCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTATGAGTACT 2701
Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357
| | |||||| || ||||||||| |||||| | |||||| || ||||| |||
Sbjct 2702 ATC-CGGGAGACAGACTGCGGGTGCTAACGTCCGTAGTCAAGAGGAAAACAATCCAGACC 2760
Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417
||||||||||||| |||| | || ||||| | ||||| || || || |||||
Sbjct 2761 GCCAGCTAAGGCCCCAAAATCATAGTTAAGTGGGA--AACGATGTGGGAAGGCATAGACA 2818
Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477
||||||| |||||||| |||||||||| | |||||||| |||||| ||||||||||||
Sbjct 2819 GCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTC 2877
Query 478 GAG 480
|||
Sbjct 2878 GAG 2880
>seq8600
Length=1328
Score = 379 bits (420), Expect = 7e-103
Identities = 378/483 (78%), Gaps = 9/483 (2%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60
|||||| || |||||| | |||||||||| ||||||||||||| | |||||| ||||
Sbjct 871 CGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCGGGCGATCTATCCAT 812
Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120
|| |||| ||||||| |||||||| ||||||| ||||||| |||| |||||||| |
Sbjct 811 GGGCAGGTTGAAGGTTAGGTAACACTGACTGGAGGACCGAACCGACTACCGTTGAAAAGT 752
Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180
||| |||||| |||||| | || |||||||||||| ||| || ||| |||||||||||||
Sbjct 751 TAGCGGATGACCTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 692
Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240
||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| ||
Sbjct 691 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTGTAGGGGGTAGAGCACTGTTTCGG 632
Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTAC 299
|||||||||||| |||||||||||||| |||||||||||||| | | ||| |
Sbjct 631 CTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTACAAGTGCCGAG 572
Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357
| ||||| | ||| ||||||||| |||||| | ||| || || || |||
Sbjct 571 CATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 514
Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417
|||||||||| ||| || | | | ||||| | ||||| || || ||| |||||
Sbjct 513 GTCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCTTAGACA 456
Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477
||||||| |||||||| |||||||||| | |||||||| |||||| ||||||||||||
Sbjct 455 GCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTC 397
Query 478 GAG 480
|||
Sbjct 396 GAG 394
>seq7050
Length=3442
Score = 316 bits (350), Expect = 7e-84
Identities = 436/604 (72%), Gaps = 52/604 (9%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59
|||||| || ||||||| || || ||| ||||| ||||||| ||||||||||||
Sbjct 1921 CGAGTCTTAATAGGGCGATAGAGTCAGTGGTATTAGACGCGAAACCTTGTGATCTACCCA 1980
Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119
||| |||| ||||| | |||||||| |||||| ||||||| | | ||||||||
Sbjct 1981 TGGGCAGGTTGAAGCTTTGGTAACACAAAGTGGAGGACCGAACCGGTTGACGTTGAAAAG 2040
Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179
| |||||| ||||||||||||||||||||| || |||||| |||||||||| || ||
Sbjct 2041 TCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGTACT 2100
Query 180 CTCCGAAAACTATTTAGGT--AG---TGCCTCAAGTATCACCATCGGGGGTAGAGC-ACT 233
| |||||| |||||||| || | | |||||| || | |||||||| |||
Sbjct 2101 CCCCGAAATGCATTTAGGTGCAGCGTTTAGTAAAGTAT----ATTAGAGGTAGAGCTACT 2156
Query 234 GTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAG 293
| | ||| | |||| | | | | |||||| | | |||||||||||||| || |
Sbjct 2157 GAT-TGGATGCGGGGGCTTCACCGCCTACCAATTCCTGACAAACTCCGAATGCTAAT-AT 2214
Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353
| | | || ||||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 2215 ATGTTTCTAGGCAGTGAGGGCATGGGTGCTAAGGTCCATGTCCGAGAGGGAAAGAACCCA 2274
Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTT----AAAC---------------- 393
||| ||||||||||| ||| |||| |||||||| ||||
Sbjct 2275 GACCATCAGCTAAGGTCCCCAAATATATGCTAAGTTGAAAAAACGCGGTTGGATTGCNNN 2334
Query 394 -------------TAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCA 440
|||| || ||||||| ||||||||||||||| |||||||||||
Sbjct 2335 NNNNNNNNNNNNNNAACGCGGTTGGATTGCTTTGACAGCTAGGATGTTAGCTTGGAAGCA 2394
Query 441 GCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAA 500
|| |||||||||| |||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 2395 GCTATTCATTTAACGAGTGCGTAACAGCTCACTAGTCGAGCGATCCGGCATGGATAATAA 2454
Query 501 TCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT-CAT-TTAT-ATG-ATCGGTAGGGGA 556
||||| | |||| ||||||||| ||| | ||| || | ||| | |||||||||
Sbjct 2455 TCGGGCA-TAAGCATATTACCGAAGCTATGGATTACATCTTCTGATGTACTGGTAGGGGA 2513
Query 557 GCAT 560
||||
Sbjct 2514 GCAT 2517
>seq14093
Length=47550
Score = 183 bits (202), Expect = 1e-43
Identities = 323/461 (70%), Gaps = 26/461 (6%)
Strand=Plus/Plus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||
Sbjct 17803 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 17862
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 17863 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 17922
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213
|| ||| | ||| |||||||||| || ||||| |||||| |||| || | | ||
Sbjct 17923 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 17980
Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267
| || | | ||||||||||| |||||||| | |||| || |||||||| |
Sbjct 17981 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 18040
Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321
| | ||||||||||| | || ||| || ||| | || | | |||||
Sbjct 18041 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 18096
Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381
||||| ||| ||||||| || | || || | ||||||| ||| || |
Sbjct 18097 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 18156
Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439
|| ||| || || |||| |||| || | |||| | |||| || |||||||||||
Sbjct 18157 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 18212
Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
||||| || ||| |||| |||||| |||||||| ||| ||
Sbjct 18213 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 18252
>seq737
Length=443
Score = 134 bits (148), Expect = 5e-29
Identities = 121/151 (80%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60
|||||| |||||||||| |||| ||| | ||||||||||||| ||||||||| ||||
Sbjct 293 CGAGTCTGAACAGGGCGTTCAGTTCGTGGCTTTAGACCCGAAACCGAGTGATCTAGCCAT 352
Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120
| ||||||||||||| |||||||| | ||||||||||||||| ||||||||
Sbjct 353 GTGCAGGATGAAGGTGGGGTAACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGG 412
Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151
| |||||| ||||| |||||||||||||
Sbjct 413 TCTTGGATGACGTGTGGCTAGGGGTGAAAGG 443
>seq6090
Length=481770
Score = 114 bits (126), Expect = 4e-23
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||| | ||| ||| | | |||||||| | |||||||| |||||
Sbjct 17024 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 17083
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | ||| | || |||||||||||||| ||| |||||||| |||
Sbjct 17084 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 17143
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152
|| ||||||| ||||| ||||||||||| ||
Sbjct 17144 AGCGGATGAGTTGTGGTTAGGGGTGAAATGC 17174
>seq12575
Length=618
Score = 87.8 bits (96), Expect = 6e-15
Identities = 83/105 (79%), Gaps = 1/105 (1%)
Strand=Plus/Plus
Query 97 CCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAA 156
||||||| | ||||||| | |||| ||||||| ||||| ||||||||||||| ||
Sbjct 42 CCGAACCTATGAATGTTGCAGAATTCTGGGATGAATTGTGGTAAGGGGTGAAAGGCCAAT 101
Query 157 CAAACTTGGA-AATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200
| ||||| || ||||||||| ||| ||||| ||||||| ||||
Sbjct 102 CTAACTTAGATGATAGCTGGTATTCTACGAAACCTATTTAAGTAG 146
>seq11122
Length=782
Score = 87.8 bits (96), Expect = 6e-15
Identities = 119/164 (73%), Gaps = 3/164 (2%)
Strand=Plus/Plus
Query 317 GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAA 376
||||||||| |||||| | ||| || || || ||| ||||||||| ||| ||
Sbjct 9 GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACCCACAGCTAAGGTCCCAAAT 68
Query 377 TGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGA 436
| || ||||||| || ||| | || | || ||||||| |||| ||| || | ||
Sbjct 69 TCACTGCTAAGTGGAA--AACCATGTGGAAAGGCAGAGACAGCCAGGAGGTTTGCCTAGA 126
Query 437 AGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
|||||||| | || ||||||||||||| |||||||| |||||
Sbjct 127 AGCAGCCACCC-TTGAAAGAGTGCGTAATAGCTCACTGATCGAG 169
>seq5227
Length=304
Score = 86.0 bits (94), Expect = 2e-14
Identities = 93/121 (77%), Gaps = 3/121 (2%)
Strand=Plus/Minus
Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419
||||||||| ||| || | | ||||||| | || || || | | | || ||| |
Sbjct 291 CAGCTAAGGTCCCCAAGTCATGGCTAAGTGGGA--AAGGATGTGAGGATCCCAAAACAAC 234
Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479
||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||| |
Sbjct 233 CAGGATGTTGGCTTAGAAGCAGCCAT-CATTTAAAGAAAGCGTAACAGCTCACTGGTCTA 175
Query 480 G 480
|
Sbjct 174 G 174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689347996160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |