Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq7100 223 6e-56
seq7050 174 3e-41
seq8600 147 4e-33
seq6090 132 9e-29
seq14093 77.0 6e-12
>seq7100
Length=3288
Score = 223 bits (246), Expect = 6e-56
Identities = 251/328 (77%), Gaps = 15/328 (5%)
Strand=Plus/Plus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|||||| |||||||||||||||| | | |||||||||| |||||| |||| |||||||
Sbjct 1792 AGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTAATAGCCTGCGATA 1851
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||| ||||||| ||||| | |||||||||| ||||||| |||||||| ||||| |
Sbjct 1852 AGCTCCGGGGAGGCGGCAAATATCCTTTGATCCGGAGATTTCTGAATGGGGGAACCCACC 1911
Query 121 C-CTTT-----GGGTCATTGCATGCTGAATACATAGG--TATGCAAAGCGAACGCGGCGA 172
| || | |||| || | |||||||||||||| |||| ||||||||| || ||
Sbjct 1912 CGCTATAAGGCGGGT-ATCATAAGCTGAATACATAGGCTTATG--AAGCGAACGAGGGGA 1968
Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232
| |||||||||| |||| | ||||||||||||||| ||||||||| ||||| ||||
Sbjct 1969 AGTGAAACATCTCAGTACCCTTAGGAAAAGAAATCAATTGAGATTCCCTCAGTAGCGGCG 2028
Query 233 AGCGAAATGGGATGAG-CCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAAT 291
|||||| ||||| || || ||| || || || || |||||||| |||||| ||
Sbjct 2029 AGCGAACGGGGATCAGCCCATTA--AGTTATGTGTGTT-TTAGTGGAACGCTCTGGGAAG 2085
Query 292 AGGAGCCATAGCGGGTGATAGCCCCGTA 319
| | ||| |||||||| ||||||
Sbjct 2086 TGCGAACGTAGAGGGTGATATTCCCGTA 2113
>seq7050
Length=3442
Score = 174 bits (192), Expect = 3e-41
Identities = 190/249 (76%), Gaps = 10/249 (4%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
|| |||||||| ||| | | |||||||||||||||| || ||||||||||| ||||
Sbjct 1320 GGCGGATGCCTAGGCTTTGAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCTACGGG 1379
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
||| | ||| | || | || ||||| ||||||||||||||| |||||||| |||
Sbjct 1380 GAGCG-GCACATACGCATTAATCCGTAGATTTCCGAATGGGACAACCCGGCAGGTTG--- 1435
Query 130 CATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTA 189
| || || | | | | ||| ||| |||||||| || |||||||||||||||||||
Sbjct 1436 -AAGGCCTG-TCACTGC----GTAAGCAGAGCGAACGTGGGGAACTGAAACATCTAAGTA 1489
Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249
| ||||||||||||||| |||||||| ||||||||||||||||| |||| |||
Sbjct 1490 CCCATAGGAAAAGAAATCAATTGAGATTCCGTAAGTAGTGGCGAGCGAACGCGGATTAGC 1549
Query 250 CTTTACGAG 258
| | | |||
Sbjct 1550 CCTAAAGAG 1558
>seq8600
Length=1328
Score = 147 bits (162), Expect = 4e-33
Identities = 131/164 (80%), Gaps = 9/164 (5%)
Strand=Plus/Minus
Query 159 AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTC 218
||||||| || ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1320 AGCGAACCAGGGGAACTGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTC 1261
Query 219 CCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGA---TAGT 275
|| |||||||||||||||| |||| |||| ||| |||||| |||| |||
Sbjct 1260 CCTTAGTAGTGGCGAGCGAACGGGGACCAGCCCTTA------AGTTGATTTGAGATTAGC 1207
Query 276 GGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319
|||| ||||||||| | ||||||| |||||||||||| |||
Sbjct 1206 GGAACGCTCTGGAAAGTGCGGCCATAGTGGGTGATAGCCCTGTA 1163
>seq6090
Length=481770
Score = 132 bits (146), Expect = 9e-29
Identities = 178/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 16399 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 16458
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 16459 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 16511
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 16512 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 16568
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 16569 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 16628
Query 249 CCT 251
|||
Sbjct 16629 CCT 16631
>seq14093
Length=47550
Score = 77.0 bits (84), Expect = 6e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| || |||||
Sbjct 17172 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 17231
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 17232 GGCGAGCGAGAGCGGAT 17248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918263020640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |