Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq7100 223 6e-56 seq7050 174 3e-41 seq8600 147 4e-33 seq6090 132 9e-29 seq14093 77.0 6e-12 >seq7100 Length=3288 Score = 223 bits (246), Expect = 6e-56 Identities = 251/328 (77%), Gaps = 15/328 (5%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||| | | |||||||||| |||||| |||| ||||||| Sbjct 1792 AGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTAATAGCCTGCGATA 1851 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| | |||||||||| ||||||| |||||||| ||||| | Sbjct 1852 AGCTCCGGGGAGGCGGCAAATATCCTTTGATCCGGAGATTTCTGAATGGGGGAACCCACC 1911 Query 121 C-CTTT-----GGGTCATTGCATGCTGAATACATAGG--TATGCAAAGCGAACGCGGCGA 172 | || | |||| || | |||||||||||||| |||| ||||||||| || || Sbjct 1912 CGCTATAAGGCGGGT-ATCATAAGCTGAATACATAGGCTTATG--AAGCGAACGAGGGGA 1968 Query 173 ACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCG 232 | |||||||||| |||| | ||||||||||||||| ||||||||| ||||| |||| Sbjct 1969 AGTGAAACATCTCAGTACCCTTAGGAAAAGAAATCAATTGAGATTCCCTCAGTAGCGGCG 2028 Query 233 AGCGAAATGGGATGAG-CCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAAT 291 |||||| ||||| || || ||| || || || || |||||||| |||||| || Sbjct 2029 AGCGAACGGGGATCAGCCCATTA--AGTTATGTGTGTT-TTAGTGGAACGCTCTGGGAAG 2085 Query 292 AGGAGCCATAGCGGGTGATAGCCCCGTA 319 | | ||| |||||||| |||||| Sbjct 2086 TGCGAACGTAGAGGGTGATATTCCCGTA 2113 >seq7050 Length=3442 Score = 174 bits (192), Expect = 3e-41 Identities = 190/249 (76%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 || |||||||| ||| | | |||||||||||||||| || ||||||||||| |||| Sbjct 1320 GGCGGATGCCTAGGCTTTGAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCTACGGG 1379 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| | ||| | || | || ||||| ||||||||||||||| |||||||| ||| Sbjct 1380 GAGCG-GCACATACGCATTAATCCGTAGATTTCCGAATGGGACAACCCGGCAGGTTG--- 1435 Query 130 CATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTA 189 | || || | | | | ||| ||| |||||||| || ||||||||||||||||||| Sbjct 1436 -AAGGCCTG-TCACTGC----GTAAGCAGAGCGAACGTGGGGAACTGAAACATCTAAGTA 1489 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 | ||||||||||||||| |||||||| ||||||||||||||||| |||| ||| Sbjct 1490 CCCATAGGAAAAGAAATCAATTGAGATTCCGTAAGTAGTGGCGAGCGAACGCGGATTAGC 1549 Query 250 CTTTACGAG 258 | | | ||| Sbjct 1550 CCTAAAGAG 1558 >seq8600 Length=1328 Score = 147 bits (162), Expect = 4e-33 Identities = 131/164 (80%), Gaps = 9/164 (5%) Strand=Plus/Minus Query 159 AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTC 218 ||||||| || ||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1320 AGCGAACCAGGGGAACTGAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTC 1261 Query 219 CCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGATAGTTGAATTGA---TAGT 275 || |||||||||||||||| |||| |||| ||| |||||| |||| ||| Sbjct 1260 CCTTAGTAGTGGCGAGCGAACGGGGACCAGCCCTTA------AGTTGATTTGAGATTAGC 1207 Query 276 GGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 |||| ||||||||| | ||||||| |||||||||||| ||| Sbjct 1206 GGAACGCTCTGGAAAGTGCGGCCATAGTGGGTGATAGCCCTGTA 1163 >seq6090 Length=481770 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 16399 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 16458 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 16459 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCGAA 16511 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 16512 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 16568 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 16569 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 16628 Query 249 CCT 251 ||| Sbjct 16629 CCT 16631 >seq14093 Length=47550 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 17172 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 17231 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 17232 GGCGAGCGAGAGCGGAT 17248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918263020640