Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq11782 700 0.0 seq9483 695 0.0 seq7136 695 0.0 seq1592 630 2e-178 seq6593 116 1e-23 seq8250 80.6 9e-13 seq14093 78.8 3e-12 seq12171 78.8 3e-12 >seq11782 Length=94184 Score = 700 bits (776), Expect = 0.0 Identities = 477/533 (89%), Gaps = 6/533 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 86140 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 86081 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 86080 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 86021 Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||| || || |||| ||| ||| | || | ||| || |||| |||| Sbjct 86020 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 85963 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||| Sbjct 85962 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTCCAGCTCCCA 85903 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85902 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 85843 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 85842 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 85783 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85782 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 85723 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85722 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 85663 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 85662 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 85610 Score = 590 bits (654), Expect = 2e-166 Identities = 426/486 (88%), Gaps = 7/486 (1%) Strand=Plus/Minus Query 55 ACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCA 114 |||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 67546 ACCTGCACTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCATCACCTGACAATGTCT 67487 Query 115 TCAACCCGGATCGGCCC--GCGAAGGA-CCTTAACGCCAGAAA-ATGGTCGGTGAAGACC 170 || ||||||||||||| | || || |||| ||| ||| | || | ||| || Sbjct 67486 TCCGCCCGGATCGGCCCCTGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CC 67429 Query 171 AGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG 230 | | || |||| || ||||||||| ||| ||| ||||||||||||||||| ||||| Sbjct 67428 GGCTTCGATTCACGGAATAAGTAAAATAACATTAAAAGTAGTGGTATTTCACTTTCGCCG 67369 Query 231 AAAC-GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 67368 TTTCCGGCTCCCACTTATACTACACCTCTCAAGTTATTTCACAAAGTCGGACTAGAGTCA 67309 Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 67308 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTACCGAGCCCGTTCCCTTGGCTGTGGTT 67249 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 67248 TCGCTGGATAGTAGACAGGGACAATGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 67189 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 67188 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCGTTTACCCG 67129 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 ||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||| Sbjct 67128 CGCTTGGTTGAATTTCTTCACTTTGACGTTCAGAGCACTAGGTAGAAATCACATTCCGTG 67069 Query 530 AACATC 535 | |||| Sbjct 67068 AGCATC 67063 >seq9483 Length=174417 Score = 695 bits (770), Expect = 0.0 Identities = 477/534 (89%), Gaps = 7/534 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 172679 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 172738 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 172739 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 172798 Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||| || || |||| ||| ||| | || | ||| || |||| |||| Sbjct 172799 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 172856 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCC 241 || ||||||||| |||| ||| ||||||||||||||||| ||||| | |||||| Sbjct 172857 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCAGCTCCC 172916 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172917 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 172976 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 172977 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 173036 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173037 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 173096 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173097 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 173156 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 173157 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 173210 >seq7136 Length=2357723 Score = 695 bits (770), Expect = 0.0 Identities = 477/534 (89%), Gaps = 7/534 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1384643 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1384584 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1384583 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 1384524 Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||| || || |||| ||| ||| | || | ||| || |||| |||| Sbjct 1384523 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 1384466 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCC 241 || ||||||||| |||| ||| ||||||||||||||||| ||||| | |||||| Sbjct 1384465 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCAGCTCCC 1384406 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1384405 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 1384346 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1384345 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 1384286 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1384285 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 1384226 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1384225 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 1384166 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1384165 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 1384112 >seq1592 Length=28874 Score = 630 bits (698), Expect = 2e-178 Identities = 401/435 (92%), Gaps = 3/435 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 24790 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 24731 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 24730 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 24671 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 |||||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||| Sbjct 24670 GGCCCGCGAAGGACCTTAACGCTAGAAGATGGGCGGTGAAGCCCAGTTCCGCTTCATTGA 24611 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||||||||||| |||||||||| |||||||| |||||| | || Sbjct 24610 ATAAGTAAAAAAACGATAAGGGTAGAGGTATTTCACCGGCGCCGAA---GCTCCCTCCTA 24554 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| | | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 24553 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 24494 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 24493 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 24434 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24433 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 24374 Query 427 TGGCTACCTTAAGAG 441 ||||||||||||||| Sbjct 24373 TGGCTACCTTAAGAG 24359 Score = 168 bits (186), Expect = 2e-39 Identities = 99/103 (96%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 23986 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACATCACTTTGACATTC 23927 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||| || |||||| Sbjct 23926 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCATTTTCTG 23884 >seq6593 Length=415509 Score = 116 bits (128), Expect = 1e-23 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||| | ||||||| Sbjct 236311 CTTTTGTTCCACACGAGATTTCTGTTCTCATTGAGCTCATCTTAGGATAATTGCGTTAGC 236370 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||| || ||||||||||||||||| |||||||| || || | |||| Sbjct 236371 TTTTAACAGATGTGTCGTCCCAGCCAAACTCCCCATCTGACAATATCTTCCGCTTAGATC 236430 Query 127 GGCCCGCGA 135 ||||| ||| Sbjct 236431 GGCCCCCGA 236439 >seq8250 Length=1256182 Score = 80.6 bits (88), Expect = 9e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||||||| ||||||| ||||||||||||| |||||| ||||||||||||||||| Sbjct 813166 CTTCCACTTATACTACACCATTCAAGTCATTTCATAAAGTCATACTAGAGTCAAGCTCAA 813225 Query 297 CAGGGTC 303 || ||| Sbjct 813226 TAGAGTC 813232 >seq14093 Length=47550 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 19265 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 19206 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 19205 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 19160 >seq12171 Length=83436 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 45149 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 45208 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 45209 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 45254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634956109920