Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq11782 700 0.0
seq9483 695 0.0
seq7136 695 0.0
seq1592 630 2e-178
seq6593 116 1e-23
seq8250 80.6 9e-13
seq14093 78.8 3e-12
seq12171 78.8 3e-12
>seq11782
Length=94184
Score = 700 bits (776), Expect = 0.0
Identities = 477/533 (89%), Gaps = 6/533 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 86140 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 86081
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 86080 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 86021
Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182
||||| || || |||| ||| ||| | || | ||| || |||| ||||
Sbjct 86020 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 85963
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242
|| ||||||||| |||| ||| ||||||||||||||||| ||||| | |||||||
Sbjct 85962 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTCCAGCTCCCA 85903
Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85902 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 85843
Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 85842 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 85783
Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85782 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 85723
Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85722 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 85663
Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 85662 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 85610
Score = 590 bits (654), Expect = 2e-166
Identities = 426/486 (88%), Gaps = 7/486 (1%)
Strand=Plus/Minus
Query 55 ACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCA 114
|||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 67546 ACCTGCACTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCATCACCTGACAATGTCT 67487
Query 115 TCAACCCGGATCGGCCC--GCGAAGGA-CCTTAACGCCAGAAA-ATGGTCGGTGAAGACC 170
|| ||||||||||||| | || || |||| ||| ||| | || | ||| ||
Sbjct 67486 TCCGCCCGGATCGGCCCCTGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CC 67429
Query 171 AGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG 230
| | || |||| || ||||||||| ||| ||| ||||||||||||||||| |||||
Sbjct 67428 GGCTTCGATTCACGGAATAAGTAAAATAACATTAAAAGTAGTGGTATTTCACTTTCGCCG 67369
Query 231 AAAC-GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289
| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 67368 TTTCCGGCTCCCACTTATACTACACCTCTCAAGTTATTTCACAAAGTCGGACTAGAGTCA 67309
Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 67308 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTACCGAGCCCGTTCCCTTGGCTGTGGTT 67249
Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409
||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 67248 TCGCTGGATAGTAGACAGGGACAATGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 67189
Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 67188 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGCCGTTTACCCG 67129
Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529
||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||
Sbjct 67128 CGCTTGGTTGAATTTCTTCACTTTGACGTTCAGAGCACTAGGTAGAAATCACATTCCGTG 67069
Query 530 AACATC 535
| ||||
Sbjct 67068 AGCATC 67063
>seq9483
Length=174417
Score = 695 bits (770), Expect = 0.0
Identities = 477/534 (89%), Gaps = 7/534 (1%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 172679 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 172738
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 172739 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 172798
Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182
||||| || || |||| ||| ||| | || | ||| || |||| ||||
Sbjct 172799 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 172856
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCC 241
|| ||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||
Sbjct 172857 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCAGCTCCC 172916
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172917 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 172976
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 172977 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 173036
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173037 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 173096
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173097 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 173156
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 173157 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 173210
>seq7136
Length=2357723
Score = 695 bits (770), Expect = 0.0
Identities = 477/534 (89%), Gaps = 7/534 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 1384643 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1384584
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1384583 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 1384524
Query 127 GGCCCGCGAA---GGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182
||||| || || |||| ||| ||| | || | ||| || |||| ||||
Sbjct 1384523 GGCCCCCGTGAGGGGGCCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 1384466
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCC 241
|| ||||||||| |||| ||| ||||||||||||||||| ||||| | ||||||
Sbjct 1384465 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCGTTTCCAGCTCCC 1384406
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384405 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 1384346
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1384345 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGT 1384286
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384285 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 1384226
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384225 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 1384166
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1384165 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTGAGCATC 1384112
>seq1592
Length=28874
Score = 630 bits (698), Expect = 2e-178
Identities = 401/435 (92%), Gaps = 3/435 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 24790 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 24731
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 24730 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 24671
Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186
|||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||
Sbjct 24670 GGCCCGCGAAGGACCTTAACGCTAGAAGATGGGCGGTGAAGCCCAGTTCCGCTTCATTGA 24611
Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246
|||||||||||||||||||||||| |||||||||| |||||||| |||||| | ||
Sbjct 24610 ATAAGTAAAAAAACGATAAGGGTAGAGGTATTTCACCGGCGCCGAA---GCTCCCTCCTA 24554
Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306
||||||||| | | ||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 24553 TTCTACACCCCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 24494
Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24493 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 24434
Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24433 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 24374
Query 427 TGGCTACCTTAAGAG 441
|||||||||||||||
Sbjct 24373 TGGCTACCTTAAGAG 24359
Score = 168 bits (186), Expect = 2e-39
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 23986 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTACATCACTTTGACATTC 23927
Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543
||||||||||||||||||||||||||||||||| || ||||||
Sbjct 23926 AGAGCACTGGGCAGAAATCACATTGCGTCAACACCATTTTCTG 23884
>seq6593
Length=415509
Score = 116 bits (128), Expect = 1e-23
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | ||||||| | |||||||
Sbjct 236311 CTTTTGTTCCACACGAGATTTCTGTTCTCATTGAGCTCATCTTAGGATAATTGCGTTAGC 236370
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||| || ||||||||||||||||| |||||||| || || | ||||
Sbjct 236371 TTTTAACAGATGTGTCGTCCCAGCCAAACTCCCCATCTGACAATATCTTCCGCTTAGATC 236430
Query 127 GGCCCGCGA 135
||||| |||
Sbjct 236431 GGCCCCCGA 236439
>seq8250
Length=1256182
Score = 80.6 bits (88), Expect = 9e-13
Identities = 58/67 (87%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|| |||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 813166 CTTCCACTTATACTACACCATTCAAGTCATTTCATAAAGTCATACTAGAGTCAAGCTCAA 813225
Query 297 CAGGGTC 303
|| |||
Sbjct 813226 TAGAGTC 813232
>seq14093
Length=47550
Score = 78.8 bits (86), Expect = 3e-12
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| ||||
Sbjct 19265 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 19206
Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
||||||||| || ||| | ||||||| |||||||||||| | ||||
Sbjct 19205 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 19160
>seq12171
Length=83436
Score = 78.8 bits (86), Expect = 3e-12
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428
||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| ||||
Sbjct 45149 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 45208
Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474
||||||||| || ||| | ||||||| |||||||||||| | ||||
Sbjct 45209 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 45254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634956109920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |