Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq8932 385 2e-104
seq7050 280 5e-73
seq14093 192 2e-46
seq10345 178 4e-42
seq12171 156 1e-35
seq6284 145 3e-32
seq6090 132 2e-28
seq12318 102 3e-19
seq7337 77.0 1e-11
>seq8932
Length=1192
Score = 385 bits (426), Expect = 2e-104
Identities = 429/567 (76%), Gaps = 27/567 (5%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59
||||| ||| ||||||||||||||| | ||| ||| ||| |||| || ||| |||| |
Sbjct 610 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACC-GATTTC 552
Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119
| ||| | ||||| | ||||| | | |||||||||| ||| ||||| | ||||||||
Sbjct 551 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCA 493
Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179
|| ||||||||||||| |||||||| | | || ||| | || || |||||| ||
Sbjct 492 GTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAA--CCT 435
Query 180 CTACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237
| | | | ||| |||||||||||| | | |||||| ||| |||| ||| |||
Sbjct 434 CAAAGTTGCCAGGGTGGTATTTCAAGGATGGCTCCACGCAGACTGGCGTCCACGCTTCAA 375
Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297
|| || |||||||||||||||| ||| ||||||||| | | |||||| ||| |||||
Sbjct 374 AGCCTACCACCTATCCTACACATGCCGACACGAATGCCAGTGCAAAGCTACAGTAAAGGT 315
Query 298 CC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356
| |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||
Sbjct 314 GCACGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCA 255
Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416
| | | || || | |||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 254 CTGAGTCTCTGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 195
Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 194 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGC 135
Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536
|||||| | | || ||| ||| ||| ||||||||||||||
Sbjct 134 TTCAATCAAGAG-CTTGCACCCCA----------TCA--------ATTAACCTTCCAGCA 94
Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563
|||||||||||||| || ||||| ||
Sbjct 93 CCGGGCAGGCGTCACACCCTATACGTC 67
>seq7050
Length=3442
Score = 280 bits (310), Expect = 5e-73
Identities = 284/365 (78%), Gaps = 15/365 (4%)
Strand=Plus/Minus
Query 203 CAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCTACACAAAC 262
||| ||||||||||| |||||| || || ||||||||||||||||||||||||||
Sbjct 3442 CAATGACTCCACAACACCTAGCGATGCTGCTTCATAGTCTCCCACCTATCCTACACATTA 3383
Query 263 CGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGC 321
||| | | |||||| |||||||||| ||||| | | |||||||||||||| | ||
Sbjct 3382 TTTACCCGAAGTCAATACGAAGCTATAGTAAAGGTTCACAGGGTCTTTTCGTCCCGTTGC 3323
Query 322 GCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGG 381
| ||| ||||||| || |||| ||||||||||| | |||||||||||| |
Sbjct 3322 GATTAACCGGCATCTTCACCGATACTACAATTTCACCGAGATCATGGTTGAGACAGT-GC 3264
Query 382 GGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 440
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3263 CCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 3204
Query 441 AGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCA 500
|||| ||||||||||| ||||||||||||||||||||| ||| || || | |
Sbjct 3203 AGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTTAAGAGCTTCGAATTAC- 3145
Query 501 CGTGGTGTGCTCACGAGTCCT--CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTAT 558
| || || ||| |||||||||||||||||||||||| ||||| || |||
Sbjct 3144 -------TTCTAAC--CCCCTTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTAT 3094
Query 559 ACCTC 563
|| ||
Sbjct 3093 ACATC 3089
>seq14093
Length=47550
Score = 192 bits (212), Expect = 2e-46
Identities = 342/495 (69%), Gaps = 38/495 (8%)
Strand=Plus/Minus
Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135
||||| | | |||||||||| ||| ||||| || ||||||||| |||||||||||||
Sbjct 19552 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 19494
Query 136 GGCACTGTCCC--CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAGA 190
||| |||||| | ||| || || || || |||||| |||| | |||
Sbjct 19493 CGCAGTGTCCCGCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGA 19434
Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250
||||| ||||| | | || | | ||| | || | |||||||||
Sbjct 19433 GTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCTA 19389
Query 251 TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309
||||||||| | | || || | | |||||||||| ||||| | |||||||||
Sbjct 19388 TCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTA 19329
Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369
|||| |||| | | ||||||| || | | ||||||||||||| | ||
Sbjct 19328 CCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTC 19269
Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429
|||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 19268 GGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAAT 19209
Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489
||||||||||||||| |||| |||||| ||||||||||| |||||||| ||| ||
Sbjct 19208 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC 19149
Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549
| | | ||| | |||| || || ||||||||||||||||| |||
Sbjct 19148 TT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCGGGCAGGTGTC 19105
Query 550 AGTCCGTATACCTCG 564
|| | ||||| |||
Sbjct 19104 AGACTCTATACATCG 19090
>seq10345
Length=916
Score = 178 bits (196), Expect = 4e-42
Identities = 196/260 (75%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||||||| |||||||||| |||| | ||| ||| ||| |||| | | ||||| ||
Sbjct 637 TCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTCC 696
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|||| |||||| | ||||| | | |||||||||| ||| ||||| | |||||||||
Sbjct 697 GACCACGCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 755
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180
| |||||||||||||| || |||| | |||||| |||| || |||||| ||
Sbjct 756 TCAAACTACCCACCAGACATGGTCCTCGCTCCAGATTATGGAGCAGAGTTAGAACCTCAA 815
Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240
|| ||| |||||||||||| | | |||||| | |||||||| || | ||| ||
Sbjct 816 TATTACCAGGGTGGTATTTCAAGATTGGCTCCACCGCAACTAGCGTCGCGGTTTCAAAGC 875
Query 241 CTCCCACCTATCCTACACAA 260
||||||||||||||||||||
Sbjct 876 CTCCCACCTATCCTACACAA 895
>seq12171
Length=83436
Score = 156 bits (172), Expect = 1e-35
Identities = 145/184 (79%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359
||||||||| |||| |||| | | ||||||| || | | |||||||||||
Sbjct 45076 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 45135
Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419
|| | || |||||||| ||| ||||||||| |||||||||||||||| ||||| |
Sbjct 45136 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 45195
Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct 45196 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 45255
Query 480 AATT 483
|||
Sbjct 45256 CATT 45259
>seq6284
Length=6094
Score = 145 bits (160), Expect = 3e-32
Identities = 213/296 (72%), Gaps = 9/296 (3%)
Strand=Plus/Minus
Query 267 CCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGA 325
|| || |||||| ||| | | ||||||| | | |||||||| |||| | || |
Sbjct 4755 CCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGT 4696
Query 326 AACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG 385
| ||||||| || | | ||||||||| |||| | ||||||| | ||
Sbjct 4695 AGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAG 4637
Query 386 -TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 4636 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 4577
Query 445 TGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTG 504
||||||||||| |||||||| || |||||||| | ||| ||| || ||
Sbjct 4576 CCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTC 4523
Query 505 GTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
| | |||| | ||| ||||||| |||| ||||||||||||| || ||||
Sbjct 4522 ATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 4467
>seq6090
Length=481770
Score = 132 bits (146), Expect = 2e-28
Identities = 135/175 (77%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 39709 TCGTTACGCCTTTCGTACGGGTCGGAACTTACCAGACAAGGAATTTCGCTACCTTAGGAC 39768
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505
|||||||||| |||||||| || |||||||| | | ||| ||| || ||
Sbjct 39769 CGTTATAGTTATGGCCGCCGTTCACCGGGGCTTC-AGTCGCCGGCTC-----CCCTGTCA 39822
Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
| | |||| | ||| ||||||| |||| ||||||||||||| || ||||
Sbjct 39823 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 39877
>seq12318
Length=640
Score = 102 bits (112), Expect = 3e-19
Identities = 99/126 (79%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
|||||||||| ||||| ||||||||| ||||| ||| |||||||| | | | || ||
Sbjct 125 TCGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACTCTACGCACGGTTACC 66
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | |||||||| ||||||| ||||||||||| ||| ||| ||| ||| ||||||
Sbjct 65 AAGCGTGCTGAGGGTACCTTTGAAAGCCTCCGTTACTCTTTTGGA-GGCGACCACCCCAG 7
Query 121 TTAAAC 126
| ||||
Sbjct 6 TCAAAC 1
>seq7337
Length=334867
Score = 77.0 bits (84), Expect = 1e-11
Identities = 60/72 (83%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 385 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444
||||||| || || || ||||| ||||||||| ||||| |||||| ||||||||||||
Sbjct 127855 GTCGTTATGCTTTTTGTATAGGTCAGAACTTACCTGACAAAGAATTTTGCTACCTTAGGA 127796
Query 445 TGGTTATAGTTA 456
||||||||||
Sbjct 127795 CTGTTATAGTTA 127784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702146087040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |