Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq8932 385 2e-104 seq7050 280 5e-73 seq14093 192 2e-46 seq10345 178 4e-42 seq12171 156 1e-35 seq6284 145 3e-32 seq6090 132 2e-28 seq12318 102 3e-19 seq7337 77.0 1e-11 >seq8932 Length=1192 Score = 385 bits (426), Expect = 2e-104 Identities = 429/567 (76%), Gaps = 27/567 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| ||| ||||||||||||||| | ||| ||| ||| |||| || ||| |||| | Sbjct 610 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACC-GATTTC 552 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| | ||||| | | |||||||||| ||| ||||| | |||||||| Sbjct 551 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCA 493 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||||||||||| |||||||| | | || ||| | || || |||||| || Sbjct 492 GTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAA--CCT 435 Query 180 CTACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | | | | ||| |||||||||||| | | |||||| ||| |||| ||| ||| Sbjct 434 CAAAGTTGCCAGGGTGGTATTTCAAGGATGGCTCCACGCAGACTGGCGTCCACGCTTCAA 375 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 || || |||||||||||||||| ||| ||||||||| | | |||||| ||| ||||| Sbjct 374 AGCCTACCACCTATCCTACACATGCCGACACGAATGCCAGTGCAAAGCTACAGTAAAGGT 315 Query 298 CC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | |||||||||| |||| |||| ||| | ||||||| || | | | |||||||| Sbjct 314 GCACGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCA 255 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 | | | || || | |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 254 CTGAGTCTCTGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 195 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 194 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGC 135 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536 |||||| | | || ||| ||| ||| |||||||||||||| Sbjct 134 TTCAATCAAGAG-CTTGCACCCCA----------TCA--------ATTAACCTTCCAGCA 94 Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||| || ||||| || Sbjct 93 CCGGGCAGGCGTCACACCCTATACGTC 67 >seq7050 Length=3442 Score = 280 bits (310), Expect = 5e-73 Identities = 284/365 (78%), Gaps = 15/365 (4%) Strand=Plus/Minus Query 203 CAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCTACACAAAC 262 ||| ||||||||||| |||||| || || |||||||||||||||||||||||||| Sbjct 3442 CAATGACTCCACAACACCTAGCGATGCTGCTTCATAGTCTCCCACCTATCCTACACATTA 3383 Query 263 CGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGC 321 ||| | | |||||| |||||||||| ||||| | | |||||||||||||| | || Sbjct 3382 TTTACCCGAAGTCAATACGAAGCTATAGTAAAGGTTCACAGGGTCTTTTCGTCCCGTTGC 3323 Query 322 GCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGG 381 | ||| ||||||| || |||| ||||||||||| | |||||||||||| | Sbjct 3322 GATTAACCGGCATCTTCACCGATACTACAATTTCACCGAGATCATGGTTGAGACAGT-GC 3264 Query 382 GGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 440 || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3263 CCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 3204 Query 441 AGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCA 500 |||| ||||||||||| ||||||||||||||||||||| ||| || || | | Sbjct 3203 AGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTTAAGAGCTTCGAATTAC- 3145 Query 501 CGTGGTGTGCTCACGAGTCCT--CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTAT 558 | || || ||| |||||||||||||||||||||||| ||||| || ||| Sbjct 3144 -------TTCTAAC--CCCCTTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTAT 3094 Query 559 ACCTC 563 || || Sbjct 3093 ACATC 3089 >seq14093 Length=47550 Score = 192 bits (212), Expect = 2e-46 Identities = 342/495 (69%), Gaps = 38/495 (8%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 19552 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 19494 Query 136 GGCACTGTCCC--CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAGA 190 ||| |||||| | ||| || || || || |||||| |||| | ||| Sbjct 19493 CGCAGTGTCCCGCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGA 19434 Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250 ||||| ||||| | | || | | ||| | || | ||||||||| Sbjct 19433 GTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCTA 19389 Query 251 TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309 ||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 19388 TCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTA 19329 Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 19328 CCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTC 19269 Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429 |||||||| ||| ||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 19268 GGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAAT 19209 Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||||||||| |||| |||||| ||||||||||| |||||||| ||| || Sbjct 19208 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC 19149 Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549 | | | ||| | |||| || || ||||||||||||||||| ||| Sbjct 19148 TT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCGGGCAGGTGTC 19105 Query 550 AGTCCGTATACCTCG 564 || | ||||| ||| Sbjct 19104 AGACTCTATACATCG 19090 >seq10345 Length=916 Score = 178 bits (196), Expect = 4e-42 Identities = 196/260 (75%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||| |||| | ||| ||| ||| |||| | | ||||| || Sbjct 637 TCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTCC 696 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| |||||| | ||||| | | |||||||||| ||| ||||| | ||||||||| Sbjct 697 GACCACGCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 755 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | |||||||||||||| || |||| | |||||| |||| || |||||| || Sbjct 756 TCAAACTACCCACCAGACATGGTCCTCGCTCCAGATTATGGAGCAGAGTTAGAACCTCAA 815 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || ||| |||||||||||| | | |||||| | |||||||| || | ||| || Sbjct 816 TATTACCAGGGTGGTATTTCAAGATTGGCTCCACCGCAACTAGCGTCGCGGTTTCAAAGC 875 Query 241 CTCCCACCTATCCTACACAA 260 |||||||||||||||||||| Sbjct 876 CTCCCACCTATCCTACACAA 895 >seq12171 Length=83436 Score = 156 bits (172), Expect = 1e-35 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 45076 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 45135 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 45136 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 45195 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 45196 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 45255 Query 480 AATT 483 ||| Sbjct 45256 CATT 45259 >seq6284 Length=6094 Score = 145 bits (160), Expect = 3e-32 Identities = 213/296 (72%), Gaps = 9/296 (3%) Strand=Plus/Minus Query 267 CCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGA 325 || || |||||| ||| | | ||||||| | | |||||||| |||| | || | Sbjct 4755 CCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGT 4696 Query 326 AACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG 385 | ||||||| || | | ||||||||| |||| | ||||||| | || Sbjct 4695 AGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAG 4637 Query 386 -TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4636 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 4577 Query 445 TGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTG 504 ||||||||||| |||||||| || |||||||| | ||| ||| || || Sbjct 4576 CCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTC 4523 Query 505 GTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 4522 ATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 4467 >seq6090 Length=481770 Score = 132 bits (146), Expect = 2e-28 Identities = 135/175 (77%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||| Sbjct 39709 TCGTTACGCCTTTCGTACGGGTCGGAACTTACCAGACAAGGAATTTCGCTACCTTAGGAC 39768 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 |||||||||| |||||||| || |||||||| | | ||| ||| || || Sbjct 39769 CGTTATAGTTATGGCCGCCGTTCACCGGGGCTTC-AGTCGCCGGCTC-----CCCTGTCA 39822 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 39823 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 39877 >seq12318 Length=640 Score = 102 bits (112), Expect = 3e-19 Identities = 99/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||| ||||||||| ||||| ||| |||||||| | | | || || Sbjct 125 TCGACTTGTAGGTCTCACAGTCAAGCACCCTTATGCCATTACACTCTACGCACGGTTACC 66 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | |||||||| ||||||| ||||||||||| ||| ||| ||| ||| |||||| Sbjct 65 AAGCGTGCTGAGGGTACCTTTGAAAGCCTCCGTTACTCTTTTGGA-GGCGACCACCCCAG 7 Query 121 TTAAAC 126 | |||| Sbjct 6 TCAAAC 1 >seq7337 Length=334867 Score = 77.0 bits (84), Expect = 1e-11 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 385 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 ||||||| || || || ||||| ||||||||| ||||| |||||| |||||||||||| Sbjct 127855 GTCGTTATGCTTTTTGTATAGGTCAGAACTTACCTGACAAAGAATTTTGCTACCTTAGGA 127796 Query 445 TGGTTATAGTTA 456 |||||||||| Sbjct 127795 CTGTTATAGTTA 127784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702146087040