Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2083 224 2e-56 seq6090 123 5e-26 seq7013 102 2e-19 seq1336 86.0 1e-14 >seq2083 Length=391 Score = 224 bits (248), Expect = 2e-56 Identities = 177/212 (83%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| ||||||||| || |||| | || | |||||||| Sbjct 212 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCGTATAGTACCTTCAGCTTTCCACACGT 153 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 |||| | ||||| || || ||||||||||||||| || ||| || || |||||||||| Sbjct 152 GGAAAGGTTTATCCCTATACAAAAGAAGTTTACAACCCATAGGGCCGTCGTCCTTCACGC 93 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 ||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||| Sbjct 92 GGGATGGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAG 33 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGG 212 |||| ||| |||||||||||| ||| |||||| Sbjct 32 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGG 1 >seq6090 Length=481770 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 12933 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 12885 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 12884 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 12832 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 12831 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 12772 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 12771 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 12712 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 12711 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 12673 >seq7013 Length=359222 Score = 102 bits (112), Expect = 2e-19 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | || ||| ||||| ||| |||| || | ||| |||| || Sbjct 119745 AAAAGAAGTTCACGAACCATAGG-CCTTCTACCTCCACGAGACATTGCTCTGTCAGGCTT 119687 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 || |||||| || ||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct 119686 TCACCCATTGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTTTGGGCTGTGTCTCAG 119627 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||| | ||| || | ||||||| || Sbjct 119626 TCCCAGTATGGCTGATCATCCTCTCGGA 119599 >seq1336 Length=1448602 Score = 86.0 bits (94), Expect = 1e-14 Identities = 142/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 77 TTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAG 136 ||| |||||||||| || | || | || ||||| ||| ||| | | | ||| |||| Sbjct 173581 TTAGAAAAGAAGTTCACCACCCAT-GAGCCTTCTACCTCCACACGGCATTGCTCCTTCAA 173639 Query 137 ACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTC 196 | | || |||||| || ||||| |||||||||| | ||||||||||| | | || Sbjct 173640 AATTACGCCCATTGCGGAAAATTCCCCACTGCTGCCCC---TAGGAGTTTGGGCTGCATC 173696 Query 197 TCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGC 256 ||||| | ||||||| |||| |||||||| | | |||| ||| | | || || | Sbjct 173697 TCAGTCCTAATGTGGTTGACCATCCTCTCAAATCAGCTATTGATCATCGTCTCAGTAAAC 173756 Query 257 CGTTACCCCGCCTACTACCTAAT 279 || || |||| |||| |||| Sbjct 173757 TATTGCCTCGCCAACTAGTTAAT 173779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068640588480