Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq2083 224 2e-56
seq6090 123 5e-26
seq7013 102 2e-19
seq1336 86.0 1e-14
>seq2083
Length=391
Score = 224 bits (248), Expect = 2e-56
Identities = 177/212 (83%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||||||||||||| ||||||||| || |||| | || | ||||||||
Sbjct 212 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCGTATAGTACCTTCAGCTTTCCACACGT 153
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
|||| | ||||| || || ||||||||||||||| || ||| || || ||||||||||
Sbjct 152 GGAAAGGTTTATCCCTATACAAAAGAAGTTTACAACCCATAGGGCCGTCGTCCTTCACGC 93
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
||||||| |||| ||||| |||||| |||||||||||||||||||||||||||||
Sbjct 92 GGGATGGCTGGATCAGGCTCTCACCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAG 33
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGG 212
|||| ||| |||||||||||| ||| ||||||
Sbjct 32 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGG 1
>seq6090
Length=481770
Score = 123 bits (136), Expect = 5e-26
Identities = 194/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 12933 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 12885
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||| | ||||| ||| |||||
Sbjct 12884 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 12832
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 12831 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 12772
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 12771 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 12712
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 12711 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 12673
>seq7013
Length=359222
Score = 102 bits (112), Expect = 2e-19
Identities = 112/148 (76%), Gaps = 1/148 (1%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | || ||| ||||| ||| |||| || | ||| |||| ||
Sbjct 119745 AAAAGAAGTTCACGAACCATAGG-CCTTCTACCTCCACGAGACATTGCTCTGTCAGGCTT 119687
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
|| |||||| || ||||| ||||||| |||||||||||||||||| | |||||||||
Sbjct 119686 TCACCCATTGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTTTGGGCTGTGTCTCAG 119627
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228
| ||| | ||| || | ||||||| ||
Sbjct 119626 TCCCAGTATGGCTGATCATCCTCTCGGA 119599
>seq1336
Length=1448602
Score = 86.0 bits (94), Expect = 1e-14
Identities = 142/203 (70%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 77 TTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAG 136
||| |||||||||| || | || | || ||||| ||| ||| | | | ||| ||||
Sbjct 173581 TTAGAAAAGAAGTTCACCACCCAT-GAGCCTTCTACCTCCACACGGCATTGCTCCTTCAA 173639
Query 137 ACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTC 196
| | || |||||| || ||||| |||||||||| | ||||||||||| | | ||
Sbjct 173640 AATTACGCCCATTGCGGAAAATTCCCCACTGCTGCCCC---TAGGAGTTTGGGCTGCATC 173696
Query 197 TCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGC 256
||||| | ||||||| |||| |||||||| | | |||| ||| | | || || |
Sbjct 173697 TCAGTCCTAATGTGGTTGACCATCCTCTCAAATCAGCTATTGATCATCGTCTCAGTAAAC 173756
Query 257 CGTTACCCCGCCTACTACCTAAT 279
|| || |||| |||| ||||
Sbjct 173757 TATTGCCTCGCCAACTAGTTAAT 173779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068640588480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |