Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1592 407 2e-111
seq11782 105 1e-20
seq7136 105 1e-20
seq9483 102 1e-19
>seq1592
Length=28874
Score = 407 bits (450), Expect = 2e-111
Identities = 260/279 (93%), Gaps = 3/279 (1%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || ||| || ||||||||||||||||||||||||||||||| |
Sbjct 25114 GTACGAGAGGAACCGCCGA-TTCGGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 25171
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 25172 GCCGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATACCA 25231
Query 121 GAACGGGGTGATTC-TCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179
|||||||||||| | || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 25232 GAACGGGGTGATGCCTCCCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCAGAA 25291
Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239
||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 25292 CCTCAGCAGGCTGGCAACGGGCGTCCCGCGGAAGCGCTGGGCGCCTGGCTGGCGGATTGC 25351
Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||||||||||| ||||||||||||||| ||||||||||
Sbjct 25352 AATTTCACCATGGGCAGGGATAAATCCTCTGCAGACGAC 25390
>seq11782
Length=94184
Score = 105 bits (116), Expect = 1e-20
Identities = 100/125 (80%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 86463 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 86520
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 86521 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 86580
Query 121 GAACG 125
|| ||
Sbjct 86581 GAGCG 86585
Score = 82.4 bits (90), Expect = 1e-13
Identities = 88/114 (77%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| | || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 67938 GTATGAGAGGAACTGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 67995
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||| | |||||||||| ||||| |||||||||| |||||||
Sbjct 67996 GGCGCGAAGCTACCGTGCCCTGGATTATGACTGAATGCCTCTAAGTTAGAATCC 68049
>seq7136
Length=2357723
Score = 105 bits (116), Expect = 1e-20
Identities = 100/125 (80%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 1384966 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1385023
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 1385024 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1385083
Query 121 GAACG 125
|| ||
Sbjct 1385084 GAGCG 1385088
>seq9483
Length=174417
Score = 102 bits (112), Expect = 1e-19
Identities = 100/125 (80%), Gaps = 3/125 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 172356 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAA-AGCCAGT 172300
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 172299 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 172240
Query 121 GAACG 125
|| ||
Sbjct 172239 GAGCG 172235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819081634560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |