Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1592 407 2e-111 seq11782 105 1e-20 seq7136 105 1e-20 seq9483 102 1e-19 >seq1592 Length=28874 Score = 407 bits (450), Expect = 2e-111 Identities = 260/279 (93%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || ||| || ||||||||||||||||||||||||||||||| | Sbjct 25114 GTACGAGAGGAACCGCCGA-TTCGGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCATT 25171 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 25172 GCCGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATACCA 25231 Query 121 GAACGGGGTGATTC-TCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAA 179 |||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||| Sbjct 25232 GAACGGGGTGATGCCTCCCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCAGAA 25291 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 ||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 25292 CCTCAGCAGGCTGGCAACGGGCGTCCCGCGGAAGCGCTGGGCGCCTGGCTGGCGGATTGC 25351 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||||||||||| ||||||||||||||| |||||||||| Sbjct 25352 AATTTCACCATGGGCAGGGATAAATCCTCTGCAGACGAC 25390 >seq11782 Length=94184 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 86463 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 86520 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 86521 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 86580 Query 121 GAACG 125 || || Sbjct 86581 GAGCG 86585 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| | || ||| | | ||||||| | ||| || ||| || |||| Sbjct 67938 GTATGAGAGGAACTGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 67995 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | |||||||||| ||||| |||||||||| ||||||| Sbjct 67996 GGCGCGAAGCTACCGTGCCCTGGATTATGACTGAATGCCTCTAAGTTAGAATCC 68049 >seq7136 Length=2357723 Score = 105 bits (116), Expect = 1e-20 Identities = 100/125 (80%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1384966 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1385023 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 1385024 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1385083 Query 121 GAACG 125 || || Sbjct 1385084 GAGCG 1385088 >seq9483 Length=174417 Score = 102 bits (112), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 172356 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAA-AGCCAGT 172300 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 172299 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 172240 Query 121 GAACG 125 || || Sbjct 172239 GAGCG 172235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819081634560