Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5601 156 3e-33 seq9360 113 4e-20 >seq5601 Length=566945 Score = 156 bits (172), Expect = 3e-33 Identities = 387/578 (67%), Gaps = 11/578 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| ||| || ||| |||||||| || || |||||||| || | Sbjct 476971 TGTTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTT 476912 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||||| |||||||||||| |||| | ||||| | ||||| || || || Sbjct 476911 GGACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAGTGGGAATCCCTAACGGCCG 476852 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || |||| ||||| | || ||| | || ||||| ||||| |||||||| |||||| Sbjct 476851 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGAATCGTCC 476792 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 || || | | | ||| | | || || ||||| || ||||||||| |||| Sbjct 476791 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 476732 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||||||||| || ||||| ||||| ||||||| || |||||| | || | || | Sbjct 476731 ACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAA 476672 Query 61364 CGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 ||||||| | | | | || || | | || || || ||| | || ||| | ||| Sbjct 476671 CGTACATAAAAAACTCCGACGAAAAGAG-CCGCTTATTTCGCGCCTTTGAAACGGTGCCG 476613 Query 61423 -GCGGTGAAGCGGAAA-GCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 ||| || | ||| || ||||||||| | ||||||||| | | ||| |||| Sbjct 476612 TGCGTTG--CCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGG---CTCGGAGACAT 476558 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT- 61539 | | || || || | || ||||| || || || |||| ||| || | |||| Sbjct 476557 TCGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTC-TCGGGTAGTTTC 476499 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| || ||||||||||| || || || | ||||| || || |||||| || ||| Sbjct 476498 TGCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAG 476439 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | || || || || || || | || || ||||| || Sbjct 476438 CTAATCTCGCGAGATGAAGGACTCCACTGCGATTTCGC 476401 >seq9360 Length=2047533 Score = 113 bits (124), Expect = 4e-20 Identities = 381/581 (66%), Gaps = 17/581 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| | |||||| |||||||| || || ||||| || || | Sbjct 1277443 TGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 1277502 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||| || ||| | || |||| | |||||||| || | || Sbjct 1277503 GGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAAC---CG 1277559 Query 61184 GTGA--ACAA-CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 ||| | || || ||| | | || ||| | || ||||| || || || ||||| |||| Sbjct 1277560 CTGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG 1277619 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 || ||||| | | | | ||| | |||||| || || | ||||||||| | Sbjct 1277620 TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCT 1277679 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 ||||||||||||| || ||||| ||||| ||||||| || |||||| | || | | Sbjct 1277680 TCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAG 1277739 Query 61361 ATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGAC-GAT 61418 | || ||||||| || | | || || | | || | || | ||||||||||| | | Sbjct 1277740 AAACTTACATCAAAGACTCCGACGAAAAG-AACCGTCTCTTTCACGCCATCGAGACGGTT 1277798 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478 || ||| | | |||||| ||||| || ||||||||| | | ||| || Sbjct 1277799 CCCTGCGTCGCA-AAGAAAGCCACGTGGGCGTTAAATTGGATCGACGG---CTCGGAGAC 1277854 Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG--TGTATTTTTCAGTGGATCG 61536 || | || |||| | || ||||| || ||||| | | || |||| ||| Sbjct 1277855 TTTCGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAG-GGAGTT 1277913 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 |||| ||| || |||||| | || || || || | ||||| || | || ||| || Sbjct 1277914 TTTG-CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAAC 1277972 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 |||||||| || || || ||||| | || || ||||| || Sbjct 1277973 GAGTTGATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGC 1278013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397495731455600