Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq6848 583 1e-161 seq10805 459 3e-124 seq6804 138 1e-27 seq8585 98.7 1e-15 >seq6848 Length=375620 Score = 583 bits (646), Expect = 1e-161 Identities = 717/970 (74%), Gaps = 11/970 (1%) Strand=Plus/Plus Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCT 188931 ||| | |||||||| || | |||||||| ||||| ||||||||||||| | | | Sbjct 331180 ACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 331239 Query 188932 GCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCAT 188990 ||||| |||| || || ||||||| | ||| | || || ||||| ||||| || || Sbjct 331240 GCAACT-TCTGTATTTATTATCGCCTTCATTGCT-CTCCTCCAGTAGATATTGACGGTAT 331297 Query 188991 CCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGT 189050 || ||||| || |||| || || | ||||||||||| || || |||||||| || | Sbjct 331298 TCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTAT 331357 Query 189051 CCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGA 189110 ||| | || || || ||| | || || ||||| || |||||||| || || | || Sbjct 331358 TCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGA 331417 Query 189111 TGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCAT 189170 ||| ||| | ||||| || ||||||| | || | || | |||||| | | || | Sbjct 331418 TGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--T 331475 Query 189171 CTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTG 189227 || || | |||||||||||||||||||||| || |||||| |||||||||||||| Sbjct 331476 GTA-GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 331534 Query 189228 GATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATC 189286 ||| ||| |||| || || || |||||||||||||| | || || || || |||| | Sbjct 331535 GAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACC 331593 Query 189287 CTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACT 189346 | | |||||||| ||| ||||| | ||||| | || ||| ||| || ||||||| Sbjct 331594 CAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACT 331653 Query 189347 ACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAG 189406 |||| |||| ||||| || |||||||||||||| |||||||| ||||||||| | || | Sbjct 331654 TCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCG 331713 Query 189407 TCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTT 189466 | || ||||| ||||| || || || ||| || ||||||||||| | || |||||| Sbjct 331714 TAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTA 331773 Query 189467 CACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAG 189526 || | | |||||||| |||| || || || ||||||| || || |||| Sbjct 331774 GTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAG 331833 Query 189527 AAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAAT 189586 | |||||||| || || ||||| |||||||| || ||||| || || | |||||||||| Sbjct 331834 AGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAAT 331893 Query 189587 ATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGG 189646 |||| |||||||| || ||||| | || |||||||| ||||| ||||| || || | Sbjct 331894 ATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAG 331953 Query 189647 GTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACT 189706 |||||||||| || || | || | ||||| ||||| |||||| | ||||| ||||| | Sbjct 331954 GTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATT 332013 Query 189707 TCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCA 189766 |||| ||||| | ||||| ||||||||||||| | || || ||||| || || | | Sbjct 332014 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTA 332073 Query 189767 ACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTG 189826 | |||||| |||||||||||||| |||||||| ||||| ||||| ||||||||||| | Sbjct 332074 ATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAG 332133 Query 189827 ATCTGGCAGC 189836 | || || || Sbjct 332134 ACCTAGCTGC 332143 Score = 583 bits (646), Expect = 1e-161 Identities = 715/969 (74%), Gaps = 9/969 (1%) Strand=Plus/Minus Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCT 188931 ||| | |||||||| || | |||||||| ||||| ||||||||||||| | | | Sbjct 360589 ACTGAAAACCGTCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 360530 Query 188932 GCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCAT 188990 ||||| |||| || || ||||||| | ||||| || || ||||| ||||| || || Sbjct 360529 GCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTAT 360471 Query 188991 CCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGT 189050 || ||||| || |||| || || | ||||||||||| || || |||||||| || | Sbjct 360470 TCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTAT 360411 Query 189051 CCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGA 189110 ||| | || || || ||| | || || ||||| || |||||||| || || | || Sbjct 360410 TCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGA 360351 Query 189111 TGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCAT 189170 ||| ||| | ||||| || ||||||| | || | || | |||||| | | || | Sbjct 360350 TGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--T 360293 Query 189171 CTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTG 189227 || || | |||||||||||||||||||||| || |||||| |||||||||||||| Sbjct 360292 GTA-GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTG 360234 Query 189228 GATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCC 189287 ||| ||| | || || || |||||||||||||| | || || || || |||| || Sbjct 360233 GAT-TGCTGTTGATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCC 360175 Query 189288 TTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTA 189347 | |||||||| ||| ||||| | ||||| | || ||| ||| || ||||||| Sbjct 360174 AATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTT 360115 Query 189348 CATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGT 189407 |||| |||| ||||| || |||||||||||||| |||||||| ||||||||| | || || Sbjct 360114 CATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGT 360055 Query 189408 CGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTC 189467 || ||||| ||||| || || || ||| || ||||||||||| | || |||||| Sbjct 360054 AGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAG 359995 Query 189468 ACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGA 189527 || | | |||||||| |||| || || || ||||||| || || ||||| Sbjct 359994 TTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGA 359935 Query 189528 AGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATA 189587 |||||||| || || ||||| |||||||| || ||||| || || | ||||||||||| Sbjct 359934 GGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATA 359875 Query 189588 TGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGG 189647 ||| |||||||| || ||||| | || |||||||| ||||| ||||| || || || Sbjct 359874 TGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGG 359815 Query 189648 TATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTT 189707 ||||||||| || || | || | ||||| ||||| |||||| | ||||| ||||| || Sbjct 359814 TATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTT 359755 Query 189708 CAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAA 189767 ||| ||||| | ||||| ||||||||||||| | || || ||||| || || | || Sbjct 359754 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAA 359695 Query 189768 CCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGA 189827 |||||| |||||||||||||| |||||||| ||||| ||||| ||||||||||| || Sbjct 359694 TCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 359635 Query 189828 TCTGGCAGC 189836 || || || Sbjct 359634 CCTAGCTGC 359626 >seq10805 Length=1012358 Score = 459 bits (508), Expect = 3e-124 Identities = 539/726 (74%), Gaps = 2/726 (0%) Strand=Plus/Minus Query 190275 TGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTT 190334 ||| ||||||| || |||||||| ||||||| ||||| || |||||| | ||||| ||| Sbjct 50206 TGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTT 50147 Query 190335 GAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 190393 ||||| || || || || | | || ||||| ||||| || || ||||||| ||| || Sbjct 50146 GAACTTGCTCGCTCGGTTCAAT-TGCGACCTTATAATGCAATAGCATTCTCTGCTCCAAT 50088 Query 190394 CGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGC 190453 |||||||||||| || || || || || || || ||||| || |||||||||| || Sbjct 50087 TGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 50028 Query 190454 GCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAA 190513 ||| || ||||| || ||||| || || ||| |||| || || || || || ||||| Sbjct 50027 GCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAA 49968 Query 190514 CTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACT 190573 ||||| |||||||||| || |||||||| ||||| ||| | |||| | || || || Sbjct 49967 TTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCT 49908 Query 190574 GTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAA 190633 | || || ||||| | || ||||| |||||||| | |||||||||||| ||||| Sbjct 49907 ATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAA 49848 Query 190634 CACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAA 190693 ||| || || || || | || |||| ||||| ||||||||||||||||| || || Sbjct 49847 CACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAA 49788 Query 190694 CCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTT 190753 ||| || ||||||||||||||||| ||||| || ||||| | ||||| |||||||| Sbjct 49787 CCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTT 49728 Query 190754 TATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGC 190813 |||| | ||||| || || | ||| | |||| | | | || | | || || || Sbjct 49727 TATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGC 49668 Query 190814 TCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGA 190873 || ||||| |||||||||||||| || ||||| || ||| | ||||| |||||||| || Sbjct 49667 CCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGA 49608 Query 190874 GTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGC 190933 || |||||||| |||||||||||||| ||||| || || ||| ||||| | ||| |||| Sbjct 49607 ATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGC 49548 Query 190934 ACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAA 190993 || ||||| || ||||| || || |||| || || || || | || | || || Sbjct 49547 GGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAA 49488 Query 190994 CGCTCT 190999 |||||| Sbjct 49487 CGCTCT 49482 >seq6804 Length=382778 Score = 138 bits (152), Expect = 1e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 190806 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAA 190865 || || || || ||||| |||||||||||||| || |||||||| ||| | ||||| || Sbjct 63706 GGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAAGAAATCCGTGCAGCGAAA 63647 Query 190866 GATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCA 190925 ||||| || || |||| ||| |||||||||||||| ||||| || || ||| ||||| | Sbjct 63646 GATCCTGAATTTGAGAATTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 63587 Query 190926 TGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCA 190985 ||| |||| || ||||| || ||||| || || |||| || || || || | || Sbjct 63586 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 63527 Query 190986 AGAGGCAACGCTCT 190999 | || |||||||| Sbjct 63526 CGTGGAAACGCTCT 63513 >seq8585 Length=236491 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 190162 TTCTTA-CAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 190220 |||||| | || || || || || |||||| || | | | |||||| | | |||| Sbjct 27779 TTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTA 27720 Query 190221 TGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCT 190280 |||||||||||| | ||||| ||||| | ||| ||| | || || || ||| || Sbjct 27719 TGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACT 27660 Query 190281 TTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTG 190340 ||||| || |||||||| ||||||| ||||| || ||||| | |||| || |||| Sbjct 27659 TTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTCATAATCTGTCAATTCAAACTT 27600 Query 190341 GCACGTCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTT 190400 | | | || | | ||||| ||||| || || |||| || ||| || | |||| Sbjct 27599 ACTCACTTTATTTGCA-----CCTTATAATGCAATAGCATTCTTTGCTCCAATTGTTGTT 27545 Query 190401 TTTGTT 190406 |||||| Sbjct 27544 TTTGTT 27539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633961783710000