Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq1282 401 9e-110
seq1 401 9e-110
seq705 266 5e-69
seq474 95.1 2e-17
>seq1282
Length=25111302
Score = 401 bits (444), Expect = 9e-110
Identities = 245/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 11289989 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 11290046
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11290047 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 11290106
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 11290107 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 11290166
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 11290167 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 11290226
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 11290227 GCCATAGTCCCTCTAA 11290242
Score = 401 bits (444), Expect = 9e-110
Identities = 245/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 11299693 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 11299750
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11299751 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 11299810
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 11299811 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 11299870
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 11299871 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 11299930
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 11299931 GCCATAGTCCCTCTAA 11299946
Score = 394 bits (436), Expect = 1e-107
Identities = 244/256 (95%), Gaps = 4/256 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 16213623 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 16213566
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16213565 CTCGT-GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 16213507
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 16213506 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 16213447
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 16213446 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 16213387
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 16213386 GCCATAGTCCCTCTAA 16213371
Score = 390 bits (432), Expect = 2e-106
Identities = 235/245 (96%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 11619696 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCACGCTTACTAGGAATT-C 11619753
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11619754 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 11619813
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 11619814 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 11619873
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 11619874 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTCGGCCTAAGCG 11619933
Query 241 GCCAT 245
|||||
Sbjct 11619934 GCCAT 11619938
Score = 385 bits (426), Expect = 7e-105
Identities = 243/256 (95%), Gaps = 5/256 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 16204034 GTACAAAGGGCAGGGACGTAGTCAA-GCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 16203978
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 16203977 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT-CAAAGATTA 16203919
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 16203918 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 16203859
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 16203858 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 16203799
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 16203798 GCCATAGTCCCTCTAA 16203783
Score = 379 bits (420), Expect = 3e-103
Identities = 240/256 (94%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| |
Sbjct 16162514 GTACAAAGGGTAGGGACGTAGTCAACGCGAGCT-GATGACTCACGCTTACTAGGAATT-C 16162457
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16162456 CTCTTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 16162397
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 16162396 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCCG 16162337
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 16162336 CCTAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 16162277
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 16162276 GCCATAGTCCCTCTAA 16162261
Score = 307 bits (340), Expect = 2e-81
Identities = 189/199 (95%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11281504 TTCCTCGTTGA-GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 11281562
Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 11281563 TTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 11281622
Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 11281623 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAA 11281682
Query 238 AAGGCCAT-CTCCCTCGAA 255
|||||| |||||| ||
Sbjct 11281683 GCGGCCATAGTCCCTCTAA 11281701
>seq1
Length=28940139
Score = 401 bits (444), Expect = 9e-110
Identities = 245/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 15441457 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 15441514
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15441515 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 15441574
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 15441575 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 15441634
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 15441635 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 15441694
Query 241 GCCAT-CTCCCTCGAA 255
||||| |||||| ||
Sbjct 15441695 GCCATAGTCCCTCTAA 15441710
Score = 262 bits (290), Expect = 6e-68
Identities = 164/175 (94%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 82 CAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGT 141
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 15469602 CAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGACCAAGGC 15469661
Query 142 GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15469662 TATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 15469721
Query 202 ACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255
||||||||||||||||||||| ||||| |||||||| |||||| |||||| ||
Sbjct 15469722 ACAGACCTGTTATTGCCTCAAGCTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAA 15469776
>seq705
Length=2889
Score = 266 bits (294), Expect = 5e-69
Identities = 164/174 (94%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 83 AATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTG 142
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 161 AATGATCTATCCCCATCACGATGAAATTTCAAAGATTAGCCGGGCCTGTCGGCCAAGGCT 220
Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 280
Query 203 CAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255
|||||||||||||||||||||||||| |||||||| |||||| |||||| ||
Sbjct 281 CAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAA 334
>seq474
Length=3368
Score = 95.1 bits (104), Expect = 2e-17
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand=Plus/Minus
Query 188 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-C 246
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 3368 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAG 3309
Query 247 TCCCTCGAA 255
|||||| ||
Sbjct 3308 TCCCTCTAA 3300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751989815570
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