Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1282 401 9e-110 seq1 401 9e-110 seq705 266 5e-69 seq474 95.1 2e-17 >seq1282 Length=25111302 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 11289989 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 11290046 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11290047 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 11290106 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 11290107 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 11290166 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 11290167 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 11290226 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 11290227 GCCATAGTCCCTCTAA 11290242 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 11299693 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 11299750 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11299751 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 11299810 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 11299811 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 11299870 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 11299871 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 11299930 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 11299931 GCCATAGTCCCTCTAA 11299946 Score = 394 bits (436), Expect = 1e-107 Identities = 244/256 (95%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 16213623 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 16213566 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16213565 CTCGT-GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 16213507 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 16213506 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 16213447 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 16213446 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 16213387 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 16213386 GCCATAGTCCCTCTAA 16213371 Score = 390 bits (432), Expect = 2e-106 Identities = 235/245 (96%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | Sbjct 11619696 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCACGCTTACTAGGAATT-C 11619753 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11619754 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 11619813 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 11619814 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 11619873 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 11619874 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTCGGCCTAAGCG 11619933 Query 241 GCCAT 245 ||||| Sbjct 11619934 GCCAT 11619938 Score = 385 bits (426), Expect = 7e-105 Identities = 243/256 (95%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | Sbjct 16204034 GTACAAAGGGCAGGGACGTAGTCAA-GCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 16203978 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 16203977 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATT-CAAAGATTA 16203919 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 16203918 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 16203859 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 16203858 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 16203799 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 16203798 GCCATAGTCCCTCTAA 16203783 Score = 379 bits (420), Expect = 3e-103 Identities = 240/256 (94%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||| | Sbjct 16162514 GTACAAAGGGTAGGGACGTAGTCAACGCGAGCT-GATGACTCACGCTTACTAGGAATT-C 16162457 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16162456 CTCTTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 16162397 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 16162396 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCCG 16162337 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 || ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 16162336 CCTAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 16162277 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 16162276 GCCATAGTCCCTCTAA 16162261 Score = 307 bits (340), Expect = 2e-81 Identities = 189/199 (95%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11281504 TTCCTCGTTGA-GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 11281562 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 11281563 TTACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 11281622 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 11281623 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAA 11281682 Query 238 AAGGCCAT-CTCCCTCGAA 255 |||||| |||||| || Sbjct 11281683 GCGGCCATAGTCCCTCTAA 11281701 >seq1 Length=28940139 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 15441457 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 15441514 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15441515 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 15441574 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 15441575 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 15441634 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 15441635 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCG 15441694 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 15441695 GCCATAGTCCCTCTAA 15441710 Score = 262 bits (290), Expect = 6e-68 Identities = 164/175 (94%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 82 CAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGT 141 |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 15469602 CAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGACCAAGGC 15469661 Query 142 GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 201 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15469662 TATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATC 15469721 Query 202 ACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||||||||||||| ||||| |||||||| |||||| |||||| || Sbjct 15469722 ACAGACCTGTTATTGCCTCAAGCTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAA 15469776 >seq705 Length=2889 Score = 266 bits (294), Expect = 5e-69 Identities = 164/174 (94%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 83 AATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTG 142 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 161 AATGATCTATCCCCATCACGATGAAATTTCAAAGATTAGCCGGGCCTGTCGGCCAAGGCT 220 Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 221 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 280 Query 203 CAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 |||||||||||||||||||||||||| |||||||| |||||| |||||| || Sbjct 281 CAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAGTCCCTCTAA 334 >seq474 Length=3368 Score = 95.1 bits (104), Expect = 2e-17 Identities = 63/69 (91%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 188 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-C 246 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 3368 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCATAG 3309 Query 247 TCCCTCGAA 255 |||||| || Sbjct 3308 TCCCTCTAA 3300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751989815570