Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq1282 134 8e-30
seq705 134 8e-30
seq474 134 8e-30
seq1 129 3e-28
>seq1282
Length=25111302
Score = 134 bits (148), Expect = 8e-30
Identities = 102/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| ||| ||||| || ||||||| |
Sbjct 11281978 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 11282036
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 11282037 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 11282094
Score = 134 bits (148), Expect = 8e-30
Identities = 102/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| ||| ||||| || ||||||| |
Sbjct 11290519 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 11290577
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 11290578 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 11290635
Score = 134 bits (148), Expect = 8e-30
Identities = 102/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| ||| ||||| || ||||||| |
Sbjct 11300223 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 11300281
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 11300282 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 11300339
Score = 134 bits (148), Expect = 8e-30
Identities = 102/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| |||| |||| || ||||||| |
Sbjct 16194914 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 16194856
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 16194855 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 16194798
Score = 134 bits (148), Expect = 8e-30
Identities = 102/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| |||| |||| || ||||||| |
Sbjct 16203507 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 16203449
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 16203448 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 16203391
Score = 134 bits (148), Expect = 8e-30
Identities = 102/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| |||| |||| || ||||||| |
Sbjct 16213096 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 16213038
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 16213037 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 16212980
Score = 129 bits (142), Expect = 3e-28
Identities = 101/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| |||| |||| || ||||||| |
Sbjct 16162040 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 16161982
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 16161981 TAATCCCTGGTCGGCATTGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 16161924
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| ||| ||||| || ||||||| |
Sbjct 11620226 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 11620284
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| || |||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 11620285 TGATCCCTGCTCAGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 11620342
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || ||||||| |
Sbjct 16186313 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 16186255
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| |||| |||| |||||| ||||||||||||||||||||||
Sbjct 16186254 TGATCCCTGGTCGGCATCGTTTGTGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 16186197
>seq705
Length=2889
Score = 134 bits (148), Expect = 8e-30
Identities = 102/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| ||| ||||| || ||||||| |
Sbjct 611 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 669
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 670 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 727
>seq474
Length=3368
Score = 134 bits (148), Expect = 8e-30
Identities = 102/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| |||| |||| || ||||||| |
Sbjct 3023 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 2965
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 2964 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2907
>seq1
Length=28940139
Score = 129 bits (142), Expect = 3e-28
Identities = 101/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| ||| ||||| || |||||||
Sbjct 15441987 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGT 15442045
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 15442046 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 15442103
Score = 129 bits (142), Expect = 3e-28
Identities = 101/118 (86%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| ||| ||||| || |||||||
Sbjct 15470053 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCAGAGTCCTAAAAGTAACATCCGT 15470111
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 15470112 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 15470169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278396351220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |