Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1340 116 5e-24 >seq1340 Length=31410901 Score = 116 bits (128), Expect = 5e-24 Identities = 170/238 (71%), Gaps = 23/238 (10%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||| ||||||||| || |||||| | ||||| | ||| || |||| Sbjct 27106189 CCTTCCGGCACTGGGTAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 27106131 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 27106130 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 27106084 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||| |||||||||||||||| |||| ||||| |||| ||||| Sbjct 27106083 TTGTG----AGGAG--GCACCTCTTCTCCCGAAGTTACAGGGCTATTTTACCGAGTTCCT 27106030 Query 186 TAACCACAGTTCAC-CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | |||| | ||| | ||| ||||||||||||| |||||||||||||||| Sbjct 27106029 TAGAGAGAGTTGTCTCCG--CCCCTAGGTATTCTCTACCTATCCACCTGTGTCGGTTT 27105974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694390595654