Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq1340 116 5e-24
>seq1340
Length=31410901
Score = 116 bits (128), Expect = 5e-24
Identities = 170/238 (71%), Gaps = 23/238 (10%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||| ||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 27106189 CCTTCCGGCACTGGGTAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 27106131
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 27106130 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 27106084
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||| |||||||||||||||| |||| ||||| |||| |||||
Sbjct 27106083 TTGTG----AGGAG--GCACCTCTTCTCCCGAAGTTACAGGGCTATTTTACCGAGTTCCT 27106030
Query 186 TAACCACAGTTCAC-CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
|| | |||| | ||| | ||| ||||||||||||| ||||||||||||||||
Sbjct 27106029 TAGAGAGAGTTGTCTCCG--CCCCTAGGTATTCTCTACCTATCCACCTGTGTCGGTTT 27105974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694390595654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |