Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1340 214 5e-53 seq1103 161 3e-37 seq965 89.7 1e-15 >seq1340 Length=31410901 Score = 214 bits (236), Expect = 5e-53 Identities = 304/429 (71%), Gaps = 28/429 (7%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 || |||| | |||||||||||| || || ||||||| ||| ||| ||||| | Sbjct 27106390 GCAGATAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCAGGACAGTG 27106331 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||||||| ||||||| |||| |||||||| ||||||||||||||||||| Sbjct 27106330 CCCAGATCGTTACGCCTTTCGTGCGGGTCAAAACTTACCTAACAAGGAATTTCGCTACCT 27106271 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTA 180 |||||||||||| |||| |||||||||| || |||||||| ||| ||| | | || | Sbjct 27106270 TAGGACCGTTATAGTTATGGCCGCCGTTCACTGGGGCTTCAATCGTTGGCTCCCCTGTCA 27106211 Query 181 ---GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237 | | ||| | || |||||||||||| ||| |||||||| ||| |||| | Sbjct 27106210 TCGGGTCACCAACTTCCTTGACCTTCCGGCACTGGGTAGGCGTCAGCCCCCATACATGGT 27106151 Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297 ||| || ||||| ||| |||||||||| ||||||||||| |||||||| || || Sbjct 27106150 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 27106091 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 ||| ||| ||| | ||| | |||||||||||||| Sbjct 27106090 ACC------CCCTTTGTGAGGA-----------------GGCACCTCTTCTCCCGAAGTT 27106054 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 || | || |||| || |||||||| ||||| |||| || ||| ||||||||||| Sbjct 27106053 ACAGGGCTATTTTACCGAGTTCCTTAGAGAGAGTTGTCTC-CGCCCCTAGGTATTCTCTA 27105995 Query 418 CCCAACCAC 426 || | |||| Sbjct 27105994 CCTATCCAC 27105986 >seq1103 Length=43299053 Score = 161 bits (178), Expect = 3e-37 Identities = 127/152 (84%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || |||||||| | ||| | |||||||||| || ||||| Sbjct 3330219 GCATCTTCACAGAGAATTAAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 3330160 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||||||||||||| ||||| |||||||||||||||||||||| |||| |||| Sbjct 3330159 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTCGGACAGTTA 3330100 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 ||||| ||||||||||||||||||||| || Sbjct 3330099 GAGTTACTGCCGCCGTTTACCGGGGCTTCCAT 3330068 >seq965 Length=51047765 Score = 89.7 bits (98), Expect = 1e-15 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33 ATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGG 92 ||||||| || ||| | ||| || ||| ||||||| || || || ||||| | Sbjct 10711722 ATTTCACCGAACCTCTTTTCGAGGTAGTGCCTGGATCGTTATGCTTTTTGTAGAGGTCAG 10711663 Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTT 149 |||||||| ||||| |||||| ||||||||||||| ||||| ||||| |||||| || Sbjct 10711662 AACTTACCTGACAAAGAATTTTGCTACCTTAGGACTGTTATAGTTACAGCCGCCATT 10711606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260782374016