Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq1340 214 5e-53
seq1103 161 3e-37
seq965 89.7 1e-15
>seq1340
Length=31410901
Score = 214 bits (236), Expect = 5e-53
Identities = 304/429 (71%), Gaps = 28/429 (7%)
Strand=Plus/Minus
Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61
|| |||| | |||||||||||| || || ||||||| ||| ||| ||||| |
Sbjct 27106390 GCAGATAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCAGGACAGTG 27106331
Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121
|| ||||||||||| ||||||| |||| |||||||| |||||||||||||||||||
Sbjct 27106330 CCCAGATCGTTACGCCTTTCGTGCGGGTCAAAACTTACCTAACAAGGAATTTCGCTACCT 27106271
Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTA 180
|||||||||||| |||| |||||||||| || |||||||| ||| ||| | | || |
Sbjct 27106270 TAGGACCGTTATAGTTATGGCCGCCGTTCACTGGGGCTTCAATCGTTGGCTCCCCTGTCA 27106211
Query 181 ---GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA 237
| | ||| | || |||||||||||| ||| |||||||| ||| |||| |
Sbjct 27106210 TCGGGTCACCAACTTCCTTGACCTTCCGGCACTGGGTAGGCGTCAGCCCCCATACATGGT 27106151
Query 238 CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG 297
||| || ||||| ||| |||||||||| ||||||||||| |||||||| || ||
Sbjct 27106150 CTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG 27106091
Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357
||| ||| ||| | ||| | ||||||||||||||
Sbjct 27106090 ACC------CCCTTTGTGAGGA-----------------GGCACCTCTTCTCCCGAAGTT 27106054
Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417
|| | || |||| || |||||||| ||||| |||| || ||| |||||||||||
Sbjct 27106053 ACAGGGCTATTTTACCGAGTTCCTTAGAGAGAGTTGTCTC-CGCCCCTAGGTATTCTCTA 27105995
Query 418 CCCAACCAC 426
|| | ||||
Sbjct 27105994 CCTATCCAC 27105986
>seq1103
Length=43299053
Score = 161 bits (178), Expect = 3e-37
Identities = 127/152 (84%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || |||||||| | ||| | |||||||||| || |||||
Sbjct 3330219 GCATCTTCACAGAGAATTAAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 3330160
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
|| |||||||||||||||| ||||| |||||||||||||||||||||| |||| ||||
Sbjct 3330159 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTCGGACAGTTA 3330100
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164
||||| ||||||||||||||||||||| ||
Sbjct 3330099 GAGTTACTGCCGCCGTTTACCGGGGCTTCCAT 3330068
>seq965
Length=51047765
Score = 89.7 bits (98), Expect = 1e-15
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 33 ATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGG 92
||||||| || ||| | ||| || ||| ||||||| || || || ||||| |
Sbjct 10711722 ATTTCACCGAACCTCTTTTCGAGGTAGTGCCTGGATCGTTATGCTTTTTGTAGAGGTCAG 10711663
Query 93 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTT 149
|||||||| ||||| |||||| ||||||||||||| ||||| ||||| |||||| ||
Sbjct 10711662 AACTTACCTGACAAAGAATTTTGCTACCTTAGGACTGTTATAGTTACAGCCGCCATT 10711606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260782374016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |