Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1340 288 2e-75 seq1103 136 8e-30 seq965 107 4e-21 >seq1340 Length=31410901 Score = 288 bits (318), Expect = 2e-75 Identities = 278/353 (79%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||| |||||| Sbjct 27106379 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCAGGACAGTGCCCAGATCGTT 27106320 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 27106319 ACGCCTTTCGTGCGGGTCAAAACTTACCTAACAAGGAATTTCGCTACCTTAGGACCGTTA 27106260 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 |||||| |||||||||| |||||||||| | | ||| | | | || | || Sbjct 27106259 TAGTTATGGCCGCCGTTCACTGGGGCTTCAATCGTTGGCTCCCCTGTCATCGGGTCACCA 27106200 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| ||| |||||||||| || |||||| ||||| |||||| Sbjct 27106199 ACTTCCTTGACCTTCCGGCACTGGGTAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 27106140 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 27106139 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 27106080 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || ||||||| |||||||| ||||||| ||| ||||| |||||||||||| Sbjct 27106079 GAG-GAGGCACCTCTTCTCCCGAAGTTACAGGGCTATTTTACCGAGTTCCTTA 27106028 >seq1103 Length=43299053 Score = 136 bits (150), Expect = 8e-30 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||| ||| || ||||||| | | ||||| Sbjct 3330219 GCATCTTCACAGAGAATTAAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 3330160 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||||||| ||||| ||||| |||||||||||||||||||||| |||| |||| Sbjct 3330159 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTCGGACAGTTA 3330100 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 |||||| |||||||||||| ||||||| Sbjct 3330099 GAGTTACTGCCGCCGTTTACCGGGGCTT 3330072 >seq965 Length=51047765 Score = 107 bits (118), Expect = 4e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||||| || || | ||| |||||| ||||||| || ||| || |||| | Sbjct 10711722 ATTTCACCGAACCTCTTTTCGAGGTAGTGCCTGGATCGTTATGCTTTTTGTAGAGGTCAG 10711663 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTT 143 |||||||| ||||| |||||| ||||||||||||| ||||||||||| |||||| || Sbjct 10711662 AACTTACCTGACAAAGAATTTTGCTACCTTAGGACTGTTATAGTTACAGCCGCCATT 10711606 Score = 84.2 bits (92), Expect = 5e-14 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 253 GTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATA-GAC-AGGCAC 310 ||||||||||||||||||||| |||||| || ||| | || | | || |||||| Sbjct 7983182 GTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGTGACCCCTTTTGTGAGGAGGCAC 7983241 Query 311 CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCT 350 ||||||||| ||||||||||| |||||||| ||||||| Sbjct 7983242 CCCTTCTCCTGAAGTTACGGGGCTATTTTGCCAAGTTCCT 7983281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062385147648