Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq1340 239 1e-60
seq1103 223 1e-55
seq616 196 1e-47
seq1229 131 5e-28
seq965 84.2 7e-14
seq1165 78.8 3e-12
seq1282 77.0 1e-11
>seq1340
Length=31410901
Score = 239 bits (264), Expect = 1e-60
Identities = 188/225 (84%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215
||||||| ||||||| ||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 17385193 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 17385252
Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275
|||||||| ||| |||||||||||| | | |||| || || || || ||||||||
Sbjct 17385253 GAGCGCAATCCTCGTGCTTAGTTGCCACCGTCGAGTTTGGAACCCTGAGCATACTGCCGG 17385312
Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCT 335
||| || ||||||||||||| ||| |||||||| ||||||||||||||||| |||||
Sbjct 17385313 TGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCG 17385372
Query 336 ACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGA 380
|||||||||||||||||| | |||||||| |||| ||||||
Sbjct 17385373 ACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGA 17385417
>seq1103
Length=43299053
Score = 223 bits (246), Expect = 1e-55
Identities = 324/452 (72%), Gaps = 7/452 (2%)
Strand=Plus/Minus
Query 15 TGAAACTCAAAGG-AATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73
||||||||||| | ||||||| ||| || ||| |||||||||||||| | |||||||||
Sbjct 12702874 TGAAACTCAAAAGCAATTGACAGGGGCCTGCATAAGCGGTGGAGCATCTAGTTTAATTCA 12702815
Query 74 AAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCTCTAGAGATAGAGG 132
| |||| | ||||||||| | |||||||| || || || || || | |||
Sbjct 12702814 ATGCAAAGTGAAGAACCTACCTGGGGCTTGACATGCCGGGGAATCCCCTTGAAGGACAGG 12702755
Query 133 TTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGA 192
| || | || || | | ||||| |||||| | |||||| ||| || | | |
Sbjct 12702754 AGTGCCTTAAGGA--ACGCGGGAATAGGTGGTGCATGTCTATCGTCAACTC-TGCCATAA 12702698
Query 193 GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTT 252
| |||||| ||||| |||||| | |||||||| |||||| ||||| | | || ||
Sbjct 12702697 GGTGTTGGATTAAGGTTCGCAACAATTGCAACCCTCGTGCTTAGCTGCCACCTTCAAATT 12702638
Query 253 GGGCACTCTAAGTTGACTGCCGGTGACAAA--CCGGAGGAAGGTGGGGACGACGTCAAAT 310
|| || || || | || | |||| | | ||| || |||||| || || ||||| |
Sbjct 12702637 TGGAACCCTGAGCAGGCTATCAGTGATATAAGCCGAAGAAAGGTGATGATGATGTCAAGT 12702578
Query 311 CATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGC 370
|||| ||||||||||| |||||| ||||||||| |||||||| || ||||||| |
Sbjct 12702577 CATCGTGCCCCTTATGCCTTGGGCAACACACGTGTTACAATGGCCAGGCCAAAGGGTCGA 12702518
Query 371 GAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430
|| ||| ||| ||| || ||| || | ||||| | ||||||||| | ||||||
Sbjct 12702517 GATCTCGCAAGGGTGAGCTAACTCCAAGAATTCGTTCTTAATTCGGATTGAAAGCTGCAA 12702458
Query 431 CTCGACTATATGAAGCTGGAATCGCTAGTAAT 462
|||| | | |||||||||||||||||||||
Sbjct 12702457 CTCGCTTGCACGAAGCTGGAATCGCTAGTAAT 12702426
Score = 156 bits (172), Expect = 1e-35
Identities = 137/171 (80%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
|||||||||||| || || |||||||||| ||| ||| |||| |||||||||||||||||
Sbjct 17540253 GACTGCCGGTGATAAGCCAGAGGAAGGTGAGGATGACATCAAGTCATCATGCCCCTTATG 17540194
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386
||||| |||||||||||||||||| | |||||||| |||| |||||||| |
Sbjct 17540193 CCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGAGGGTGA 17540134
Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACT 437
|| || ||| ||| || || ||||||||||| || |||||||||| ||
Sbjct 17540133 GCTAACTCCAAAAACCCGTCCTTAGTTCGGATTGCAGGCTGCAACTCGCCT 17540083
>seq616
Length=36375926
Score = 196 bits (216), Expect = 1e-47
Identities = 198/256 (77%), Gaps = 4/256 (2%)
Strand=Plus/Plus
Query 245 ATTAAGT---TGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACG 301
||||||| | || || || || ||||| | |||| || || |||||||||| ||| |
Sbjct 21655345 ATTAAGTCCTTAGGAACCCTGAGCAGACTGTCAGTGATAAGCCAGAGGAAGGTGAGGATG 21655404
Query 302 ACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACA 361
||||||| |||| ||||| |||||| ||||| |||||||||||||||||| | | |||
Sbjct 21655405 ACGTCAAGTCATTATGCCTCTTATGCACTGGGCGACACACGTGCTACAATGGCCGAGACA 21655464
Query 362 AAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGT 421
||||| | || ||| |||| ||| || ||| ||| | || |||||||| |||||
Sbjct 21655465 AAGGGTCGTGATCCCGTGAGGGTGAGCTAACTCCAAAAACTCGTCCTCAGTTCAGATTGC 21655524
Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTAC 480
|| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | |
Sbjct 21655525 AGGCTGCAACTCGCCTGCATGAAGCCAGAATCGCTAGTAATCGTCGGTCAGCCATACGGC 21655584
Query 481 GGTGAATACGTTCCCG 496
| ||||| ||||||||
Sbjct 21655585 GATGAATTCGTTCCCG 21655600
>seq1229
Length=21133251
Score = 131 bits (144), Expect = 5e-28
Identities = 177/247 (72%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276
||||||||||| || |||||||| | | |||| | || || | | |||||||
Sbjct 3080496 AGCGCAACCCTCGTACTGAGTTGCCACCTTCGAGTTTGAAACCCTGAACATATTGCCGGT 3080437
Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336
| || || | |||| || ||| ||||| || |||||||||||||||| | ||| |
Sbjct 3080436 CATAAGTCGAACGAAGATGAGGAGGACGTTAAGTCATCATGCCCCTTATACCCTAGGCGA 3080377
Query 337 CACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCA 396
||||||||||||| ||| | |||||||| || | || ||| ||| || |||
Sbjct 3080376 CACACGTGCTACAGTGGCCGGGACAAAGGGTTATGATCCTGCAAGGGTGAGCTAACTCCA 3080317
Query 397 TAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456
|| |||||||||| |||||||| || |||||| |||||| ||| ||||| |||
Sbjct 3080316 AGAACCCGTTCTCAGTTTAGATTGTAGGCTACAACTCACCTATATAAAGTCGGAATGGCT 3080257
Query 457 AGTAATC 463
|||||||
Sbjct 3080256 AGTAATC 3080250
Score = 89.7 bits (98), Expect = 2e-15
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 4923440 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 4923499
Query 361 AAAGGGCAGCGAAACCGCGAGG 382
|||||| |||| ||||||||
Sbjct 4923500 AAAGGGTCGCGATCCCGCGAGG 4923521
>seq965
Length=51047765
Score = 84.2 bits (92), Expect = 7e-14
Identities = 80/101 (79%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
||||| ||||||| ||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 48640488 CGCAAAAATGAAACTAAAAGGAATTGACGAGCCCCCGCACAAGTGGTGGAGCATGTGGTT 48640429
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107
|||||| | | | ||| || |||| | || |||| |||
Sbjct 48640428 TAATTCTATTCGTGGTGAATAATCTTATC-AAGCTTGGCAT 48640389
>seq1165
Length=25613772
Score = 78.8 bits (86), Expect = 3e-12
Identities = 57/65 (88%), Gaps = 2/65 (3%)
Strand=Plus/Minus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCC--GCA 213
||||||| ||||||| ||||||||||||||| ||| || |||||||||||||||| ||
Sbjct 15233039 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCCGCCA 15232980
Query 214 ACGAG 218
|||||
Sbjct 15232979 ACGAG 15232975
>seq1282
Length=25111302
Score = 77.0 bits (84), Expect = 1e-11
Identities = 80/103 (78%), Gaps = 3/103 (3%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64
||||||||||||||| |||||||||||||| || | | ||| || ||||||| || ||
Sbjct 11620210 CGCAAGGTTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 11620152
Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107
|||||| || |||| || ||| ||||||| || |||||
Sbjct 11620151 CTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 11620109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503978974080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |