Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1340 239 1e-60 seq1103 223 1e-55 seq616 196 1e-47 seq1229 131 5e-28 seq965 84.2 7e-14 seq1165 78.8 3e-12 seq1282 77.0 1e-11 >seq1340 Length=31410901 Score = 239 bits (264), Expect = 1e-60 Identities = 188/225 (84%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 17385193 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 17385252 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 |||||||| ||| |||||||||||| | | |||| || || || || |||||||| Sbjct 17385253 GAGCGCAATCCTCGTGCTTAGTTGCCACCGTCGAGTTTGGAACCCTGAGCATACTGCCGG 17385312 Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCT 335 ||| || ||||||||||||| ||| |||||||| ||||||||||||||||| ||||| Sbjct 17385313 TGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCG 17385372 Query 336 ACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGA 380 |||||||||||||||||| | |||||||| |||| |||||| Sbjct 17385373 ACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGA 17385417 >seq1103 Length=43299053 Score = 223 bits (246), Expect = 1e-55 Identities = 324/452 (72%), Gaps = 7/452 (2%) Strand=Plus/Minus Query 15 TGAAACTCAAAGG-AATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG 73 ||||||||||| | ||||||| ||| || ||| |||||||||||||| | ||||||||| Sbjct 12702874 TGAAACTCAAAAGCAATTGACAGGGGCCTGCATAAGCGGTGGAGCATCTAGTTTAATTCA 12702815 Query 74 AAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCTCTAGAGATAGAGG 132 | |||| | ||||||||| | |||||||| || || || || || | ||| Sbjct 12702814 ATGCAAAGTGAAGAACCTACCTGGGGCTTGACATGCCGGGGAATCCCCTTGAAGGACAGG 12702755 Query 133 TTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGA 192 | || | || || | | ||||| |||||| | |||||| ||| || | | | Sbjct 12702754 AGTGCCTTAAGGA--ACGCGGGAATAGGTGGTGCATGTCTATCGTCAACTC-TGCCATAA 12702698 Query 193 GATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTT 252 | |||||| ||||| |||||| | |||||||| |||||| ||||| | | || || Sbjct 12702697 GGTGTTGGATTAAGGTTCGCAACAATTGCAACCCTCGTGCTTAGCTGCCACCTTCAAATT 12702638 Query 253 GGGCACTCTAAGTTGACTGCCGGTGACAAA--CCGGAGGAAGGTGGGGACGACGTCAAAT 310 || || || || | || | |||| | | ||| || |||||| || || ||||| | Sbjct 12702637 TGGAACCCTGAGCAGGCTATCAGTGATATAAGCCGAAGAAAGGTGATGATGATGTCAAGT 12702578 Query 311 CATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGC 370 |||| ||||||||||| |||||| ||||||||| |||||||| || ||||||| | Sbjct 12702577 CATCGTGCCCCTTATGCCTTGGGCAACACACGTGTTACAATGGCCAGGCCAAAGGGTCGA 12702518 Query 371 GAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430 || ||| ||| ||| || ||| || | ||||| | ||||||||| | |||||| Sbjct 12702517 GATCTCGCAAGGGTGAGCTAACTCCAAGAATTCGTTCTTAATTCGGATTGAAAGCTGCAA 12702458 Query 431 CTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 |||| | | ||||||||||||||||||||| Sbjct 12702457 CTCGCTTGCACGAAGCTGGAATCGCTAGTAAT 12702426 Score = 156 bits (172), Expect = 1e-35 Identities = 137/171 (80%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 |||||||||||| || || |||||||||| ||| ||| |||| ||||||||||||||||| Sbjct 17540253 GACTGCCGGTGATAAGCCAGAGGAAGGTGAGGATGACATCAAGTCATCATGCCCCTTATG 17540194 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | |||||||| |||| |||||||| | Sbjct 17540193 CCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGAGGGTGA 17540134 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACT 437 || || ||| ||| || || ||||||||||| || |||||||||| || Sbjct 17540133 GCTAACTCCAAAAACCCGTCCTTAGTTCGGATTGCAGGCTGCAACTCGCCT 17540083 >seq616 Length=36375926 Score = 196 bits (216), Expect = 1e-47 Identities = 198/256 (77%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 245 ATTAAGT---TGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACG 301 ||||||| | || || || || ||||| | |||| || || |||||||||| ||| | Sbjct 21655345 ATTAAGTCCTTAGGAACCCTGAGCAGACTGTCAGTGATAAGCCAGAGGAAGGTGAGGATG 21655404 Query 302 ACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACA 361 ||||||| |||| ||||| |||||| ||||| |||||||||||||||||| | | ||| Sbjct 21655405 ACGTCAAGTCATTATGCCTCTTATGCACTGGGCGACACACGTGCTACAATGGCCGAGACA 21655464 Query 362 AAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGT 421 ||||| | || ||| |||| ||| || ||| ||| | || |||||||| ||||| Sbjct 21655465 AAGGGTCGTGATCCCGTGAGGGTGAGCTAACTCCAAAAACTCGTCCTCAGTTCAGATTGC 21655524 Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTAC 480 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | | Sbjct 21655525 AGGCTGCAACTCGCCTGCATGAAGCCAGAATCGCTAGTAATCGTCGGTCAGCCATACGGC 21655584 Query 481 GGTGAATACGTTCCCG 496 | ||||| |||||||| Sbjct 21655585 GATGAATTCGTTCCCG 21655600 >seq1229 Length=21133251 Score = 131 bits (144), Expect = 5e-28 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276 ||||||||||| || |||||||| | | |||| | || || | | ||||||| Sbjct 3080496 AGCGCAACCCTCGTACTGAGTTGCCACCTTCGAGTTTGAAACCCTGAACATATTGCCGGT 3080437 Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336 | || || | |||| || ||| ||||| || |||||||||||||||| | ||| | Sbjct 3080436 CATAAGTCGAACGAAGATGAGGAGGACGTTAAGTCATCATGCCCCTTATACCCTAGGCGA 3080377 Query 337 CACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCA 396 ||||||||||||| ||| | |||||||| || | || ||| ||| || ||| Sbjct 3080376 CACACGTGCTACAGTGGCCGGGACAAAGGGTTATGATCCTGCAAGGGTGAGCTAACTCCA 3080317 Query 397 TAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456 || |||||||||| |||||||| || |||||| |||||| ||| ||||| ||| Sbjct 3080316 AGAACCCGTTCTCAGTTTAGATTGTAGGCTACAACTCACCTATATAAAGTCGGAATGGCT 3080257 Query 457 AGTAATC 463 ||||||| Sbjct 3080256 AGTAATC 3080250 Score = 89.7 bits (98), Expect = 2e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 4923440 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 4923499 Query 361 AAAGGGCAGCGAAACCGCGAGG 382 |||||| |||| |||||||| Sbjct 4923500 AAAGGGTCGCGATCCCGCGAGG 4923521 >seq965 Length=51047765 Score = 84.2 bits (92), Expect = 7e-14 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 ||||| ||||||| ||||||||||||| | |||||||||| |||||||||||||||| Sbjct 48640488 CGCAAAAATGAAACTAAAAGGAATTGACGAGCCCCCGCACAAGTGGTGGAGCATGTGGTT 48640429 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| | | | ||| || |||| | || |||| ||| Sbjct 48640428 TAATTCTATTCGTGGTGAATAATCTTATC-AAGCTTGGCAT 48640389 >seq1165 Length=25613772 Score = 78.8 bits (86), Expect = 3e-12 Identities = 57/65 (88%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCC--GCA 213 ||||||| ||||||| ||||||||||||||| ||| || |||||||||||||||| || Sbjct 15233039 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCCGCCA 15232980 Query 214 ACGAG 218 ||||| Sbjct 15232979 ACGAG 15232975 >seq1282 Length=25111302 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||||||||||| |||||||||||||| || | | ||| || ||||||| || || Sbjct 11620210 CGCAAGGTTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 11620152 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || |||| || ||| ||||||| || ||||| Sbjct 11620151 CTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACAT 11620109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503978974080