Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq1282 300 3e-79
seq705 300 3e-79
seq1 291 1e-76
seq474 250 4e-64
seq1340 131 3e-28
>seq1282
Length=25111302
Score = 300 bits (332), Expect = 3e-79
Identities = 226/261 (87%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11290133 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11290192
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 11290193 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 11290250
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 11290251 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 11290310
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11290311 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11290370
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 11290371 AGAAAGAGCTCTCAGTCTGTC 11290391
Score = 300 bits (332), Expect = 3e-79
Identities = 226/261 (87%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11299837 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11299896
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 11299897 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 11299954
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 11299955 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 11300014
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11300015 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11300074
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 11300075 AGAAAGAGCTCTCAGTCTGTC 11300095
Score = 293 bits (324), Expect = 4e-77
Identities = 225/261 (86%), Gaps = 7/261 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16203892 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 16203833
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 16203832 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 16203775
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 16203774 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 16203715
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 16203714 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC-CCACCACCCATAGAATCA 16203656
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 16203655 AGAAAGAGCTCTCAGTCTGTC 16203635
Score = 293 bits (324), Expect = 4e-77
Identities = 225/261 (86%), Gaps = 7/261 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16213480 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 16213421
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 16213420 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 16213363
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 16213362 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 16213303
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 16213302 TTAACCAGACAAATCGCTCCACCAACTAAG-ACGGCCATGCACCACCACCCATAGAATCA 16213244
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 16213243 AGAAAGAGCTCTCAGTCTGTC 16213223
Score = 291 bits (322), Expect = 1e-76
Identities = 224/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11281592 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11281651
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 11281652 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 11281709
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||| | | ||||||| ||||||| |||||
Sbjct 11281710 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAAGCTGAGGTCTCATTCGTTAACGGAA 11281769
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11281770 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11281829
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 11281830 AGAAAGAGCTCTCAGTCTGTC 11281850
Score = 288 bits (318), Expect = 2e-75
Identities = 223/261 (85%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11619840 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11619899
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | || |||| | ||||||||| |||||||| |
Sbjct 11619900 CCTGTTATTGCCTCAAACTTCCTCGGCCT--AAGCGGCCATAGTCCCTTTAAGAAGCTGG 11619957
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 11619958 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 11620017
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 11620018 TTAACCAGACAAATCGCTCTACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11620077
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 11620078 AGAAAGAGCTCTCAGTCTGTC 11620098
Score = 201 bits (222), Expect = 2e-49
Identities = 172/208 (83%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 16162370 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCCGCCTAGAACATCTAAGGGCATCACAGA 16162311
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 16162310 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 16162253
Query 120 CCAC-CAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| ||||
Sbjct 16162252 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAAAGGAA 16162193
Query 178 TTAACCAGACAAATCACTCCACCAACTA 205
||||||||||||||| ||||||||||||
Sbjct 16162192 TTAACCAGACAAATCGCTCCACCAACTA 16162165
>seq705
Length=2889
Score = 300 bits (332), Expect = 3e-79
Identities = 226/261 (87%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 284
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 285 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 342
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | ||||||||||||||| |||||
Sbjct 343 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 402
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 462
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 463 AGAAAGAGCTCTCAGTCTGTC 483
>seq1
Length=28940139
Score = 291 bits (322), Expect = 1e-76
Identities = 224/261 (86%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15441601 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 15441660
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||||||||| | | || |||| | |||||||||||||||||| |
Sbjct 15441661 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 15441718
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| ||||||||||||||| |||||
Sbjct 15441719 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCCGAGGTCTCGTTCGTTAACGGAA 15441778
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15441779 TTAACTAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 15441838
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 15441839 AGAAAGAGCTCTCAGTCTGTC 15441859
Score = 282 bits (312), Expect = 7e-74
Identities = 222/261 (85%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15469667 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 15469726
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||||||||||||||| ||||| | | || |||| | |||||||||||||||||| |
Sbjct 15469727 CCTGTTATTGCCTCAAGCTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 15469784
Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177
|||| | ||| || |||| |||||||| | |||| |||||||||| |||||
Sbjct 15469785 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTTTCGTTCGTTAACGGAA 15469844
Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237
||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 15469845 TTAACTAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCTATAGAATCA 15469904
Query 238 AGAAAGAGCTATCAATCTGTC 258
|||||||||| ||| ||||||
Sbjct 15469905 AGAAAGAGCTCTCAGTCTGTC 15469925
>seq474
Length=3368
Score = 250 bits (276), Expect = 4e-64
Identities = 190/220 (86%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 43 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAAT 100
||||||||||||||||||||||||||||||||||||||||| | | || |||| | ||
Sbjct 3368 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCAT 3311
Query 101 AGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAG 158
|||||||||||||||| ||||| | ||| || |||| |||||||| | ||
Sbjct 3310 AGTCCCTCTAAGAAGCTGGCCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAG 3251
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3250 GTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 3191
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||||||||| ||| ||||||
Sbjct 3190 ACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 3151
>seq1340
Length=31410901
Score = 131 bits (144), Expect = 3e-28
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27485017 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 27484958
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||| ||||||
Sbjct 27484957 GAAAGAGCTCTCAGTCTGTC 27484938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796789208838
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