Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1282 300 3e-79 seq705 300 3e-79 seq1 291 1e-76 seq474 250 4e-64 seq1340 131 3e-28 >seq1282 Length=25111302 Score = 300 bits (332), Expect = 3e-79 Identities = 226/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11290133 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11290192 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 11290193 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 11290250 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| ||||| Sbjct 11290251 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 11290310 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 11290311 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11290370 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 11290371 AGAAAGAGCTCTCAGTCTGTC 11290391 Score = 300 bits (332), Expect = 3e-79 Identities = 226/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11299837 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11299896 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 11299897 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 11299954 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| ||||| Sbjct 11299955 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 11300014 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 11300015 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11300074 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 11300075 AGAAAGAGCTCTCAGTCTGTC 11300095 Score = 293 bits (324), Expect = 4e-77 Identities = 225/261 (86%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16203892 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 16203833 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 16203832 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 16203775 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| ||||| Sbjct 16203774 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 16203715 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 16203714 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC-CCACCACCCATAGAATCA 16203656 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 16203655 AGAAAGAGCTCTCAGTCTGTC 16203635 Score = 293 bits (324), Expect = 4e-77 Identities = 225/261 (86%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16213480 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 16213421 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 16213420 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 16213363 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| ||||| Sbjct 16213362 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 16213303 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 16213302 TTAACCAGACAAATCGCTCCACCAACTAAG-ACGGCCATGCACCACCACCCATAGAATCA 16213244 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 16213243 AGAAAGAGCTCTCAGTCTGTC 16213223 Score = 291 bits (322), Expect = 1e-76 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11281592 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11281651 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 11281652 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 11281709 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||| | | ||||||| ||||||| ||||| Sbjct 11281710 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAAGCTGAGGTCTCATTCGTTAACGGAA 11281769 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 11281770 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11281829 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 11281830 AGAAAGAGCTCTCAGTCTGTC 11281850 Score = 288 bits (318), Expect = 2e-75 Identities = 223/261 (85%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11619840 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 11619899 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | || |||| | ||||||||| |||||||| | Sbjct 11619900 CCTGTTATTGCCTCAAACTTCCTCGGCCT--AAGCGGCCATAGTCCCTTTAAGAAGCTGG 11619957 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| ||||| Sbjct 11619958 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 11620017 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 11620018 TTAACCAGACAAATCGCTCTACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 11620077 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 11620078 AGAAAGAGCTCTCAGTCTGTC 11620098 Score = 201 bits (222), Expect = 2e-49 Identities = 172/208 (83%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 16162370 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCCGCCTAGAACATCTAAGGGCATCACAGA 16162311 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 16162310 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 16162253 Query 120 CCAC-CAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| |||| Sbjct 16162252 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAAAGGAA 16162193 Query 178 TTAACCAGACAAATCACTCCACCAACTA 205 ||||||||||||||| |||||||||||| Sbjct 16162192 TTAACCAGACAAATCGCTCCACCAACTA 16162165 >seq705 Length=2889 Score = 300 bits (332), Expect = 3e-79 Identities = 226/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 284 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 285 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 342 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | ||||||||||||||| ||||| Sbjct 343 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 402 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 462 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 463 AGAAAGAGCTCTCAGTCTGTC 483 >seq1 Length=28940139 Score = 291 bits (322), Expect = 1e-76 Identities = 224/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15441601 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 15441660 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 15441661 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 15441718 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| ||||||||||||||| ||||| Sbjct 15441719 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCCGAGGTCTCGTTCGTTAACGGAA 15441778 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 15441779 TTAACTAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 15441838 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 15441839 AGAAAGAGCTCTCAGTCTGTC 15441859 Score = 282 bits (312), Expect = 7e-74 Identities = 222/261 (85%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15469667 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 15469726 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||| ||||| | | || |||| | |||||||||||||||||| | Sbjct 15469727 CCTGTTATTGCCTCAAGCTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 15469784 Query 120 CCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 |||| | ||| || |||| |||||||| | |||| |||||||||| ||||| Sbjct 15469785 CCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTTTCGTTCGTTAACGGAA 15469844 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 15469845 TTAACTAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCTATAGAATCA 15469904 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 15469905 AGAAAGAGCTCTCAGTCTGTC 15469925 >seq474 Length=3368 Score = 250 bits (276), Expect = 4e-64 Identities = 190/220 (86%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 43 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAAT 100 ||||||||||||||||||||||||||||||||||||||||| | | || |||| | || Sbjct 3368 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCAT 3311 Query 101 AGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAG 158 |||||||||||||||| ||||| | ||| || |||| |||||||| | || Sbjct 3310 AGTCCCTCTAAGAAGCTGGCCACGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAG 3251 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3250 GTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 3191 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||| ||| |||||| Sbjct 3190 ACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 3151 >seq1340 Length=31410901 Score = 131 bits (144), Expect = 3e-28 Identities = 77/80 (96%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27485017 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 27484958 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 27484957 GAAAGAGCTCTCAGTCTGTC 27484938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796789208838