Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1103 95.1 1e-17 seq1340 80.6 3e-13 >seq1103 Length=43299053 Score = 95.1 bits (104), Expect = 1e-17 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || || | || |||||||||| || | | |||||||| | Sbjct 3330250 CGGGGTCTTACCGTCTAGGCGTTGGCACTCCGCATCTTCACAGAGAATTAAATTTCACCG 3330191 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 3330190 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 3330131 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||| |||| |||| Sbjct 3330130 GACAAGGAATTTCGCTACCTTCGGACAGTTA 3330100 >seq1340 Length=31410901 Score = 80.6 bits (88), Expect = 3e-13 Identities = 107/150 (71%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || | || || |||||||||| || | | ||||||| ||| Sbjct 27106408 GGGTCTTTCTGTCCAGGTGCAGATAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 27106349 Query 85 CTCACGGTTGAG-ACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | || |||| ||| || ||||||| |||| |||||||| Sbjct 27106348 C-CTCTCTCCAGGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCAAAACTTACCTA 27106290 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 27106289 ACAAGGAATTTCGCTACCTTAGGACCGTTA 27106260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547192589202