Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1229 176 1e-41 seq1 116 8e-24 >seq1229 Length=21133251 Score = 176 bits (194), Expect = 1e-41 Identities = 158/196 (81%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | ||| | ||||| || ||||||||||||||| Sbjct 16164164 TTCACGAACCGTAGGCCTTCTACCTC-CACAAGACATTG-CTCTGTCAGGCTTTCGCCCA 16164107 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||| || |||||||||||||| ||| | |||||| ||| ||||| Sbjct 16164106 TTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTGTGTCTTAGTCCCAGT 16164047 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| ||||| |||| |||| ||||||| || | | ||| |||||| Sbjct 16164046 GTGGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGTAATCTATTGCCTCAC 16163987 Query 182 CAACTAGCTAATCCGA 197 ||||||||||||| || Sbjct 16163986 CAACTAGCTAATCAGA 16163971 Score = 100 bits (110), Expect = 6e-19 Identities = 134/183 (73%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 16 ACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 ||||||| | | ||| |||||||| || ||| || ||||||||| || ||||| Sbjct 13177705 ACCTTCTACCTC-CACACGGCATTG-CTCCTTCAAATTTACGCCCATTGCGGAAAATTCC 13177762 Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||||||||||| | ||||||| ||| | | ||||||| | | || | ||||||||| Sbjct 13177763 CCACTGCTGCCCC---TAGGAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCC 13177819 Query 136 TCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCC 195 |||| | ||| || |||| ||| || || | | ||| |||| |||||||| ||||| Sbjct 13177820 TCTCGAATCAGCTATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATCA 13177879 Query 196 GAC 198 ||| Sbjct 13177880 GAC 13177882 >seq1 Length=28940139 Score = 116 bits (128), Expect = 8e-24 Identities = 168/232 (72%), Gaps = 19/232 (8%) Strand=Plus/Minus Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| | |||||| |||||||| ||||||||||| ||| |||| |||||||||| Sbjct 11211084 TGTCTCAGTCCTAGTGTGGTTGATCATCTTCTCAGACCAGCTACTGATCATCGCCTTGGT 11211025 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCC 225 ||| ||| ||||||||||||||||||| ||| | || | | || || ||| Sbjct 11211024 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-- 11210975 Query 226 GAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTT 285 || ||| |||| | | | | | || | ||||||||| |||||||| ||| Sbjct 11210974 ---GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTT 11210919 Query 286 ATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | ||| || ||| |||| ||| || || ||||||||||||||||| || Sbjct 11210918 GTTCCC--CTCCCAAGGGCATGTTCTTACGCGTTACTCACCCGTCCGCCACT 11210869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071985013440