Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq965 118 3e-24
seq1 89.7 1e-15
>seq965
Length=51047765
Score = 118 bits (130), Expect = 3e-24
Identities = 91/107 (85%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 273 GTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 332
|||||| | |||||||||||||| | | |||||||||||| || |||||||||||||||
Sbjct 48123710 GTTTCATGTTCTATTTCACTCCCTTATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACT 48123768
Query 333 AGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379
| ||| |||||||||| ||| |||||||||||||| | | ||||||
Sbjct 48123769 ACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 48123815
Score = 78.8 bits (86), Expect = 2e-12
Identities = 55/63 (87%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
|||||||||| || |||||||||||||||| ||| ||||||||| ||| |||||||||
Sbjct 914403 GGTTCTTTTCACCGTTCCCTCACGGTACTACTTCGCTATCGGTCGTCCAGGAGTATTTAG 914462
Query 364 CCT 366
|||
Sbjct 914463 CCT 914465
>seq1
Length=28940139
Score = 89.7 bits (98), Expect = 1e-15
Identities = 92/119 (77%), Gaps = 1/119 (1%)
Strand=Plus/Minus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
||| ||||||||| || || | | ||| | |||||||||||| | | ||| ||||
Sbjct 3954598 CTCACACTGCTTGGGTGCTTAAGCTCTCATGTTCTATTTCACTCTTCGATG-GGGTTTCT 3954540
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368
||||||| ||||||||| | ||| ||| |||||||||| ||| | ||||||||||||
Sbjct 3954539 TTTCGCCCTTCCCTCACAATGCTACTTCGCTATCGGTCACTCATGATTATTTAGCCTTG 3954481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241582642432
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |