Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq965 118 3e-24 seq1 89.7 1e-15 >seq965 Length=51047765 Score = 118 bits (130), Expect = 3e-24 Identities = 91/107 (85%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 273 GTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 332 |||||| | |||||||||||||| | | |||||||||||| || ||||||||||||||| Sbjct 48123710 GTTTCATGTTCTATTTCACTCCCTTATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACT 48123768 Query 333 AGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 | ||| |||||||||| ||| |||||||||||||| | | |||||| Sbjct 48123769 ACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 48123815 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||| || |||||||||||||||| ||| ||||||||| ||| ||||||||| Sbjct 914403 GGTTCTTTTCACCGTTCCCTCACGGTACTACTTCGCTATCGGTCGTCCAGGAGTATTTAG 914462 Query 364 CCT 366 ||| Sbjct 914463 CCT 914465 >seq1 Length=28940139 Score = 89.7 bits (98), Expect = 1e-15 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||| ||||||||| || || | | ||| | |||||||||||| | | ||| |||| Sbjct 3954598 CTCACACTGCTTGGGTGCTTAAGCTCTCATGTTCTATTTCACTCTTCGATG-GGGTTTCT 3954540 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 ||||||| ||||||||| | ||| ||| |||||||||| ||| | |||||||||||| Sbjct 3954539 TTTCGCCCTTCCCTCACAATGCTACTTCGCTATCGGTCACTCATGATTATTTAGCCTTG 3954481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241582642432