Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1229 136 8e-30 seq1 123 5e-26 >seq1229 Length=21133251 Score = 136 bits (150), Expect = 8e-30 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||||| || |||||||||||||| ||||| | Sbjct 16164121 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTG 16164062 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||| ||||||| |||||| | ||| |||||| | || ||| |||| ||| ||| || Sbjct 16164061 TGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGT 16164002 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||| ||||||||||| |||||| | | |||||| || Sbjct 16164001 AATCTATTGCCTCACCAACTAGCTAATCAGATGTGAGCCCTTC 16163959 Score = 93.3 bits (102), Expect = 8e-17 Identities = 126/175 (72%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| || | ||||||| | || || ||||||||||| ||| ||| Sbjct 13177722 GGCATTGCTCCTTCAAATTTACGCCCATTGCGGAAAATTCCCCACTGCTG---CCCCTAG 13177778 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||| | ||||||||| |||| || | ||| |||||| | |||| ||| Sbjct 13177779 GAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCCTCTCGAATCAGCTATTGAT 13177838 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 | ||| || || ||||| ||| ||||||| ||||| | ||||||||| || Sbjct 13177839 CATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATCAGACGCGAGCCCCTC 13177893 >seq1 Length=28940139 Score = 123 bits (136), Expect = 5e-26 Identities = 169/234 (72%), Gaps = 18/234 (8%) Strand=Plus/Minus Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||| | ||||| | ||| | |||||| || ||||| |||| ||| |||||| Sbjct 11211084 TGTCTCAGTCCTAGTGTGGTTGATCATCTTCTCAGACCAGCTACTGATCATCGCCTTGGT 11211025 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 |||||| ||||||||||| |||||| | ||||||||| || | || ||| || Sbjct 11211024 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCC 11210965 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | | || | ||||||||| |||||||| | Sbjct 11210964 TT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTG 11210921 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTA 305 || |||| ||| || |||| ||| || ||| |||||||||||||||||||||| Sbjct 11210920 TTGTTCCCCTCCCAAGGGCATGTT-CTTACGCGTTACTCACCCGTCCGCCACTA 11210868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998386042368