Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq1229 136 8e-30
seq1 123 5e-26
>seq1229
Length=21133251
Score = 136 bits (150), Expect = 8e-30
Identities = 128/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| ||||||| | || || ||||||| || |||||||||||||| ||||| |
Sbjct 16164121 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTG 16164062
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||| ||||||| |||||| | ||| |||||| | || ||| |||| ||| ||| ||
Sbjct 16164061 TGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGT 16164002
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
||||| ||||||||||| |||||| | | |||||| ||
Sbjct 16164001 AATCTATTGCCTCACCAACTAGCTAATCAGATGTGAGCCCTTC 16163959
Score = 93.3 bits (102), Expect = 8e-17
Identities = 126/175 (72%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||| || | ||||||| | || || ||||||||||| ||| |||
Sbjct 13177722 GGCATTGCTCCTTCAAATTTACGCCCATTGCGGAAAATTCCCCACTGCTG---CCCCTAG 13177778
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||| ||||| | ||||||||| |||| || | ||| |||||| | |||| |||
Sbjct 13177779 GAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCCTCTCGAATCAGCTATTGAT 13177838
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
| ||| || || ||||| ||| ||||||| ||||| | ||||||||| ||
Sbjct 13177839 CATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATCAGACGCGAGCCCCTC 13177893
>seq1
Length=28940139
Score = 123 bits (136), Expect = 5e-26
Identities = 169/234 (72%), Gaps = 18/234 (8%)
Strand=Plus/Minus
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||||||||| | ||||| | ||| | |||||| || ||||| |||| ||| ||||||
Sbjct 11211084 TGTCTCAGTCCTAGTGTGGTTGATCATCTTCTCAGACCAGCTACTGATCATCGCCTTGGT 11211025
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191
|||||| ||||||||||| |||||| | ||||||||| || | || ||| ||
Sbjct 11211024 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCC 11210965
Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251
|| ||| ||||| | | || | ||||||||| |||||||| |
Sbjct 11210964 TT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTG 11210921
Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTA 305
|| |||| ||| || |||| ||| || ||| ||||||||||||||||||||||
Sbjct 11210920 TTGTTCCCCTCCCAAGGGCATGTT-CTTACGCGTTACTCACCCGTCCGCCACTA 11210868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998386042368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |