Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq616 104 2e-20 seq1340 93.3 4e-17 seq1229 77.0 3e-12 >seq616 Length=36375926 Score = 104 bits (114), Expect = 2e-20 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| | ||| | | ||| ||| ||||||| ||||| ||| Sbjct 21655537 CGAGTTGCAGCCTGCAATCTGAACTGAGGACGAGTTTTTGGAGTTAGCTCACCCTCACGG 21655478 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || |||| ||| | |||||||| ||||||| |||| |||||| | ||| Sbjct 21655477 GATCACGACCCTTTGTCTCGGCCATTGTAGCACGTGTGTCGCCCAGTGCATAAGAGGCAT 21655418 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| |||||||||| || || |||| Sbjct 21655417 AATGACTTGACGTCATCCTCACCTTCCTCTGGCTTATCAC 21655378 >seq1340 Length=31410901 Score = 93.3 bits (102), Expect = 4e-17 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 56 TCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAG 115 ||||||| | ||| |||| ||| |||||||| ||||||| |||| |||||| Sbjct 17385417 TCGCGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAG 17385358 Query 116 GGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||| ||||||||||||||| ||||||||||||| || |||| Sbjct 17385357 GGGCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 17385312 >seq1229 Length=21133251 Score = 77.0 bits (84), Expect = 3e-12 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 45 TTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCC 104 ||||||| |||||||||| | ||| |||| ||| |||||||| ||||||| ||| Sbjct 4923530 TTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCC 4923471 Query 105 CTACCCATAAGGGCCATGAGGACTTGACGTCA 136 | |||||||| ||||| |||||||||||| Sbjct 4923470 CAGGGCATAAGGGGCATGATGACTTGACGTCA 4923439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415994366060