Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1103 187 4e-45 seq1093 93.3 7e-17 >seq1103 Length=43299053 Score = 187 bits (206), Expect = 4e-45 Identities = 198/260 (76%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| ||||| |||| | || ||| || ||| | | | | |||| Sbjct 7645189 CTTAGATGCTTTCAGCAGTTATCTGCTCCATAATTGGCTACCTAGCGTTTACCGTGGGCA 7645130 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||| ||| |||||||||| |||| ||||||||||||| ||||| ||| || |||| Sbjct 7645129 CGATAACGGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCATACTAGGGAAAGGTCCT 7645070 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| | || ||||||| | ||| ||||||||||||||| ||| || ||||||| Sbjct 7645069 CTCCATGCTCTAACGCCCATATCAAATATGGACCGAACTGTCTCATGACATTTTGAACCC 7645010 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 |||| || || |||||||||| ||||| |||||||||||| || |||| || |||||| Sbjct 7645009 AGCTTTTGTACCGCTTTAATGGGTGAACAACCCAACCCTTGGAACATACTACAACCCCAG 7644950 Query 256 GATGAGACGAGCCGACATCG 275 | | || |||| |||||| Sbjct 7644949 GTGGCGAATAGCCAACATCG 7644930 Score = 96.9 bits (106), Expect = 5e-18 Identities = 95/127 (75%), Gaps = 18/127 (14%) Strand=Plus/Plus Query 130 GCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCT 189 ||||||||||| || |||||||| |||||| ||||||||||||||| |||||| | Sbjct 32550406 GCTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTACC 32550465 Query 190 GAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAG 249 | ||||||||||||||||||||||||||||| || |||| ||| Sbjct 32550466 G------------------CTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAG 32550507 Query 250 CCCCAGG 256 ||||||| Sbjct 32550508 CCCCAGG 32550514 >seq1093 Length=11246 Score = 93.3 bits (102), Expect = 7e-17 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 11126 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 11185 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 11186 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 11245 Query 123 A 123 | Sbjct 11246 A 11246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780789425528