Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq1103 187 4e-45
seq1093 93.3 7e-17
>seq1103
Length=43299053
Score = 187 bits (206), Expect = 4e-45
Identities = 198/260 (76%), Gaps = 1/260 (0%)
Strand=Plus/Minus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75
||||||||| |||||| ||||| |||| | || ||| || ||| | | | | ||||
Sbjct 7645189 CTTAGATGCTTTCAGCAGTTATCTGCTCCATAATTGGCTACCTAGCGTTTACCGTGGGCA 7645130
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
| ||| ||| |||||||||| |||| ||||||||||||| ||||| ||| || ||||
Sbjct 7645129 CGATAACGGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCATACTAGGGAAAGGTCCT 7645070
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
||| | || ||||||| | ||| ||||||||||||||| ||| || |||||||
Sbjct 7645069 CTCCATGCTCTAACGCCCATATCAAATATGGACCGAACTGTCTCATGACATTTTGAACCC 7645010
Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255
|||| || || |||||||||| ||||| |||||||||||| || |||| || ||||||
Sbjct 7645009 AGCTTTTGTACCGCTTTAATGGGTGAACAACCCAACCCTTGGAACATACTACAACCCCAG 7644950
Query 256 GATGAGACGAGCCGACATCG 275
| | || |||| ||||||
Sbjct 7644949 GTGGCGAATAGCCAACATCG 7644930
Score = 96.9 bits (106), Expect = 5e-18
Identities = 95/127 (75%), Gaps = 18/127 (14%)
Strand=Plus/Plus
Query 130 GCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCT 189
||||||||||| || |||||||| |||||| ||||||||||||||| |||||| |
Sbjct 32550406 GCTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTACC 32550465
Query 190 GAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAG 249
| ||||||||||||||||||||||||||||| || |||| |||
Sbjct 32550466 G------------------CTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAG 32550507
Query 250 CCCCAGG 256
|||||||
Sbjct 32550508 CCCCAGG 32550514
>seq1093
Length=11246
Score = 93.3 bits (102), Expect = 7e-17
Identities = 94/121 (78%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 11126 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 11185
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 11186 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 11245
Query 123 A 123
|
Sbjct 11246 A 11246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780789425528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |