Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1229 159 8e-37 seq1 131 4e-28 >seq1229 Length=21133251 Score = 159 bits (176), Expect = 8e-37 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || | ||| ||||||||| | | ||| | ||| ||| |||||||| |||||||| Sbjct 16164164 TTCACGAACCGTAGGCCTTCTACCTCCACAAGACATTGCTCTGTCAGGCTTTCGCCCATT 16164105 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||| || |||||||||||||| ||| | |||||| ||| ||||||| Sbjct 16164104 GCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCTGTGTCTTAGTCCCAGTGT 16164045 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||| || |||| |||||| || | ||| || | ||| Sbjct 16164044 GGCTGATCATCCTCTCGGACCATTTACTGATCATCGCCTTAGTAATCTATTGCCTCACCA 16163985 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 16163984 ACTAGCTAATC 16163974 Score = 113 bits (124), Expect = 1e-22 Identities = 131/176 (74%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 |||||| | | ||| |||||| ||| | ||| || ||||||||| | || |||||||| Sbjct 13177706 CCTTCTACCTCCACACGGCATTGCTCCTTCAAATTTACGCCCATTGCGGAAAATTCCCCA 13177765 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||| ||| ||||||| ||| | | ||||||| | | || || || ||||||||| Sbjct 13177766 CTGCTG---CCCCTAGGAGTTTGGGCTGCATCTCAGTCCTAATGCGGTTGATCATCCTCT 13177822 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 | | |||||| |||| ||| || || | ||| || |||||||||| ||||| Sbjct 13177823 CGAATCAGCTATTGATCATCGTCTCAGTAAACTATTGCCTCGCCAACTAGTTAATC 13177878 >seq1 Length=28940139 Score = 131 bits (144), Expect = 4e-28 Identities = 214/307 (70%), Gaps = 30/307 (10%) Strand=Plus/Minus Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||||||| | ||||||| || ||||| |||||||||||||| |||| |||||| ||| Sbjct 11211084 TGTCTCAGTCCTAGTGTGGTTGATCATCTTCTCAGACCAGCTACTGATCATCGCCTTGGT 11211025 Query 168 GGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCG 227 || ||| || | |||||||||||||| | | | | ||| || | | Sbjct 11211024 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGG 11210973 Query 228 AAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTA 287 | ||| ||| |||| || | | | || | ||||||||| |||||||||| ||| Sbjct 11210972 A--TTCCTCCT-TTTGCTCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTG 11210918 Query 288 TCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAG 347 | ||||||| |||| ||| | | |||||||||||||||||||| ||| Sbjct 11210917 TTCCCCTCCCAAGGGCATGTTCTTACGCGTTACTCACCCGTCCGCCACT------AGAAA 11210864 Query 348 CAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 || || |||| |||| |||||||||||||||| || ||| ||||||||||| Sbjct 11210863 CACCA-----CTTC------CCGTCCGACTTGCATGTGTTAAGCATGCTGCCAGCGTTCA 11210815 Query 408 ATCTGAG 414 ||||| Sbjct 11210814 TCCTGAG 11210808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222382910848