Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq1229 170 6e-40
seq1 104 7e-20
>seq1229
Length=21133251
Score = 170 bits (188), Expect = 6e-40
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223
|||||||||||||||||| ||| || | |||| ||||||| |||||||| | | ||
Sbjct 16163971 TCTGATTAGCTAGTTGGTGAGGCAATAGATTACTAAGGCGATGATCAGTAAATGGTCCGA 16164030
Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283
|||| ||||| |||||| ||| ||| |||||| | |||||||||||||||||| || |||
Sbjct 16164031 GAGGATGATCAGCCACACTGGGACTAAGACACAGCCCAAACTCCTACGGGAGGTAGTAGT 16164090
Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343
||||||| || | |||||||| ||||||||| ||||| | | ||| | ||||||
Sbjct 16164091 GGGGAATTTTCCGCAATGGGCGAAAGCCTGACAGAGCAATGTCTTGTGGAGGTAGAAGGC 16164150
Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG 375
|| ||| |||| || ||| | |||| ||||
Sbjct 16164151 CTACGGTTCGTGAACTTCTTTTCTCAGAGAAG 16164182
Score = 158 bits (174), Expect = 4e-36
Identities = 238/333 (71%), Gaps = 9/333 (3%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||| |||||||| ||| || | |||| || ||| ||||| |||| ||
Sbjct 13177885 CGCGTCTGATTAACTAGTTGGCGAGGCAATAGTTTACTGAGACGATGATCAATAGCTGAT 13177826
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
|||||| ||||| || |||| | ||||||| | | ||||||||||| | |||||
Sbjct 13177825 TCGAGAGGATGATCAACCGCATTAGGACTGAGATGCAGCCCAAACTCCTA---GGGGCAG 13177769
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| || ||| | ||||| |||| ||| | ||
Sbjct 13177768 CAGTGGGGAATTTTCCGCAATGGGCGTAAATTTGAAGGAGCAATGCCGTGTGGAGGTAGA 13177709
Query 340 AGGCCTTC--GGGTCGTAAAGCTCTGTCCTCAAGGA-AGATAATGACGGTACTTGAGGAG 396
||| ||| |||| || || ||| | || || | || |||||||||| | |||
Sbjct 13177708 AGG--TTCATGGGTGGTGAACTTCTTTTCTAGAGAAGAGGCAATGACGGTATCTATGGAA 13177651
Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456
|||| || |||||| |||| ||| || | ||||| ||| || |||||||| |
Sbjct 13177650 TAAGCATCGACTAACTCTGTGCTGGCAACCACAATAATATAGAGGATGCAAGCGTTATTC 13177591
Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489
||| | | ||||||||| || |||||||||
Sbjct 13177590 AAAATGA-TTAGGCGTAAAGCGTCCGTAGGTGG 13177559
>seq1
Length=28940139
Score = 104 bits (114), Expect = 7e-20
Identities = 80/95 (84%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 11210990 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 11211049
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254
|||||| | ||||| ||||| | | |||||||||
Sbjct 11211050 CTGAGAAGATGATCAACCACACTAGGACTGAGACA 11211084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497579063552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |