Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1229 170 6e-40 seq1 104 7e-20 >seq1229 Length=21133251 Score = 170 bits (188), Expect = 6e-40 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| ||| || | |||| ||||||| |||||||| | | || Sbjct 16163971 TCTGATTAGCTAGTTGGTGAGGCAATAGATTACTAAGGCGATGATCAGTAAATGGTCCGA 16164030 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| |||||| ||| ||| |||||| | |||||||||||||||||| || ||| Sbjct 16164031 GAGGATGATCAGCCACACTGGGACTAAGACACAGCCCAAACTCCTACGGGAGGTAGTAGT 16164090 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| || | |||||||| ||||||||| ||||| | | ||| | |||||| Sbjct 16164091 GGGGAATTTTCCGCAATGGGCGAAAGCCTGACAGAGCAATGTCTTGTGGAGGTAGAAGGC 16164150 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG 375 || ||| |||| || ||| | |||| |||| Sbjct 16164151 CTACGGTTCGTGAACTTCTTTTCTCAGAGAAG 16164182 Score = 158 bits (174), Expect = 4e-36 Identities = 238/333 (71%), Gaps = 9/333 (3%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||| |||||||| ||| || | |||| || ||| ||||| |||| || Sbjct 13177885 CGCGTCTGATTAACTAGTTGGCGAGGCAATAGTTTACTGAGACGATGATCAATAGCTGAT 13177826 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||| ||||| || |||| | ||||||| | | ||||||||||| | ||||| Sbjct 13177825 TCGAGAGGATGATCAACCGCATTAGGACTGAGATGCAGCCCAAACTCCTA---GGGGCAG 13177769 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| || ||| | ||||| |||| ||| | || Sbjct 13177768 CAGTGGGGAATTTTCCGCAATGGGCGTAAATTTGAAGGAGCAATGCCGTGTGGAGGTAGA 13177709 Query 340 AGGCCTTC--GGGTCGTAAAGCTCTGTCCTCAAGGA-AGATAATGACGGTACTTGAGGAG 396 ||| ||| |||| || || ||| | || || | || |||||||||| | ||| Sbjct 13177708 AGG--TTCATGGGTGGTGAACTTCTTTTCTAGAGAAGAGGCAATGACGGTATCTATGGAA 13177651 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| || |||||| |||| ||| || | ||||| ||| || |||||||| | Sbjct 13177650 TAAGCATCGACTAACTCTGTGCTGGCAACCACAATAATATAGAGGATGCAAGCGTTATTC 13177591 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 ||| | | ||||||||| || ||||||||| Sbjct 13177590 AAAATGA-TTAGGCGTAAAGCGTCCGTAGGTGG 13177559 >seq1 Length=28940139 Score = 104 bits (114), Expect = 7e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 11210990 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 11211049 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACA 254 |||||| | ||||| ||||| | | ||||||||| Sbjct 11211050 CTGAGAAGATGATCAACCACACTAGGACTGAGACA 11211084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497579063552