Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1282 313 5e-83 seq1 309 6e-82 seq705 194 3e-47 seq474 105 1e-20 >seq1282 Length=25111302 Score = 313 bits (346), Expect = 5e-83 Identities = 261/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 11290300 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 11290241 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 11290240 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 11290182 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 11290181 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 11290122 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 11290121 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 11290063 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 11290062 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 11290003 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 11290002 CCTGCCCTTTGTA 11289990 Score = 313 bits (346), Expect = 5e-83 Identities = 261/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 11300004 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 11299945 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 11299944 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 11299886 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 11299885 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 11299826 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 11299825 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 11299767 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 11299766 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 11299707 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 11299706 CCTGCCCTTTGTA 11299694 Score = 309 bits (342), Expect = 6e-82 Identities = 260/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 11620007 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 11619948 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 | ||||||||| | ||| | ||||| ||||||||||||||||||||||||||||||||| Sbjct 11619947 AAAGGGACTATGGCCGCTTAGGCCGA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 11619889 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 11619888 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 11619829 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 11619828 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 11619770 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||| | ||||||||| |||||||| |||||| Sbjct 11619769 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGACTACGTC 11619710 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 11619709 CCTGCCCTTTGTA 11619697 Score = 306 bits (338), Expect = 7e-81 Identities = 260/313 (83%), Gaps = 7/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 16213313 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 16213372 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 16213373 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 16213431 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 16213432 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 16213491 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 16213492 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 16213550 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||| ||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 16213551 GTTGGTCTTC-ACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 16213609 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 16213610 CCTGCCCTTTGTA 16213622 Score = 302 bits (334), Expect = 9e-80 Identities = 259/313 (83%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 16203725 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 16203784 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 16203785 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 16203843 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 16203844 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 16203903 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | ||||||||| || || | ||||| |||||||||| |||||||||| Sbjct 16203904 GCCGACAGGCCCGGGTAATCT--TTGAATTTCATCGTGATGGGGATAGATCATTGCAATT 16203961 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| ||| |||| |||||| Sbjct 16203962 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGC-TTGACTACGTC 16204020 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 16204021 CCTGCCCTTTGTA 16204033 Score = 291 bits (322), Expect = 2e-76 Identities = 256/313 (82%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 16162203 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 16162262 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 16162263 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 16162321 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||| ||| |||||||||||||||||| | |||||||| || ||||| Sbjct 16162322 CTTAGATGTTCTAGGCGGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 16162381 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 16162382 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 16162440 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||| ||||||| ||||||||||| | ||||||||| |||||||| |||||| Sbjct 16162441 GTTGGTCTTCAAAGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGACTACGTC 16162500 Query 316 CCTGCCCTTTGTA 328 ||| ||||||||| Sbjct 16162501 CCTACCCTTTGTA 16162513 Score = 224 bits (248), Expect = 2e-56 Identities = 181/214 (85%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAAC 121 || ||| |||||||||||||||||| | ||| | ||| | ||||||||||||||||||| Sbjct 11281713 GTGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAAC 11281655 Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 11281654 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACG 11281595 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| || ||||||||| ||| | |||||||||| | ||| | ||||| ||||||| Sbjct 11281594 AGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGAT 11281536 Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 ||| |||||||||| ||| || |||||||||||| Sbjct 11281535 AGATCATTGCAATTGTTGGTC-TCAACGAGGAAT 11281503 >seq1 Length=28940139 Score = 309 bits (342), Expect = 6e-82 Identities = 231/267 (87%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAAC 121 || ||| |||||||||||||||||| | ||| | ||| | ||||||||||||||||||| Sbjct 15441722 GTGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAAC 15441664 Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 15441663 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACG 15441604 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| || ||||||||| ||| | |||||||||| | ||| | ||||| ||||||| Sbjct 15441603 AGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGAT 15441545 Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301 ||| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| | Sbjct 15441544 AGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTC 15441485 Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| ||||||||||||||||||| Sbjct 15441484 GCGTTGACTACGTCCCTGCCCTTTGTA 15441458 Score = 187 bits (206), Expect = 5e-45 Identities = 157/189 (83%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAAC 121 || ||| |||||||||||||||||| | ||| | ||| | ||||| ||||||||||||| Sbjct 15469788 GTGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGCTTGAGGCAATAAC 15469730 Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 15469729 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACG 15469670 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||| || |||||| || ||| | |||||||||| | ||| | ||||| ||||||| Sbjct 15469669 AGTCTATAGCCTTGGTCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGAT 15469611 Query 242 AGAGCATTG 250 ||| ||||| Sbjct 15469610 AGATCATTG 15469602 >seq705 Length=2889 Score = 194 bits (214), Expect = 3e-47 Identities = 187/234 (80%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 392 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 333 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 332 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 274 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 273 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 214 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||| ||| | || ||||||| | ||| | ||||| |||||||||| |||| Sbjct 213 GCCGACAGGCCCGGCTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 161 >seq474 Length=3368 Score = 105 bits (116), Expect = 1e-20 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC-GCTTTGGCGG-GTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | | | | || ||| ||||||| Sbjct 3242 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTATCCCTCCGTGGCCAGCTTCTT 3301 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 3302 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 3360 Query 136 CTTAGATG 143 |||||||| Sbjct 3361 CTTAGATG 3368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947186758144