Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq1103 147 7e-33
seq1340 122 3e-25
seq965 80.6 9e-13
>seq1103
Length=43299053
Score = 147 bits (162), Expect = 7e-33
Identities = 113/134 (84%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409
|||||||||||| | || |||||||| ||| ||||||||| ||||||||||||||||
Sbjct 3330200 AATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCG 3330141
Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469
||||| |||||||||||||||||||||| ||| |||| |||||| ||||||||||
Sbjct 3330140 CTACTTATGCGACAAGGAATTTCGCTACCTTCGGACAGTTAGAGTTACTGCCGCCGTTTA 3330081
Query 470 CTGGGGCTTCAATT 483
| |||||||| |||
Sbjct 3330080 CCGGGGCTTCCATT 3330067
>seq1340
Length=31410901
Score = 122 bits (134), Expect = 3e-25
Identities = 85/97 (88%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 27106324 TCGTTACGCCTTTCGTGCGGGTCAAAACTTACCTAACAAGGAATTTCGCTACCTTAGGAC 27106265
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482
|||||||||| |||||||| ||||||||||||||
Sbjct 27106264 CGTTATAGTTATGGCCGCCGTTCACTGGGGCTTCAAT 27106228
>seq965
Length=51047765
Score = 80.6 bits (88), Expect = 9e-13
Identities = 67/82 (82%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||| || || || ||||| ||||||||| ||||| |||||| ||||||||||||
Sbjct 10711687 TCGTTATGCTTTTTGTAGAGGTCAGAACTTACCTGACAAAGAATTTTGCTACCTTAGGAC 10711628
Query 446 GGTTATAGTTACCACCGCCGTT 467
||||||||||| ||||| ||
Sbjct 10711627 TGTTATAGTTACAGCCGCCATT 10711606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702376200448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |