Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1103 147 7e-33 seq1340 122 3e-25 seq965 80.6 9e-13 >seq1103 Length=43299053 Score = 147 bits (162), Expect = 7e-33 Identities = 113/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||||||| | || |||||||| ||| ||||||||| |||||||||||||||| Sbjct 3330200 AATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCG 3330141 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| |||||||||||||||||||||| ||| |||| |||||| |||||||||| Sbjct 3330140 CTACTTATGCGACAAGGAATTTCGCTACCTTCGGACAGTTAGAGTTACTGCCGCCGTTTA 3330081 Query 470 CTGGGGCTTCAATT 483 | |||||||| ||| Sbjct 3330080 CCGGGGCTTCCATT 3330067 >seq1340 Length=31410901 Score = 122 bits (134), Expect = 3e-25 Identities = 85/97 (88%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||| Sbjct 27106324 TCGTTACGCCTTTCGTGCGGGTCAAAACTTACCTAACAAGGAATTTCGCTACCTTAGGAC 27106265 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 |||||||||| |||||||| |||||||||||||| Sbjct 27106264 CGTTATAGTTATGGCCGCCGTTCACTGGGGCTTCAAT 27106228 >seq965 Length=51047765 Score = 80.6 bits (88), Expect = 9e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||| || || || ||||| ||||||||| ||||| |||||| |||||||||||| Sbjct 10711687 TCGTTATGCTTTTTGTAGAGGTCAGAACTTACCTGACAAAGAATTTTGCTACCTTAGGAC 10711628 Query 446 GGTTATAGTTACCACCGCCGTT 467 ||||||||||| ||||| || Sbjct 10711627 TGTTATAGTTACAGCCGCCATT 10711606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702376200448