Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq1229 104 5e-20
>seq1229
Length=21133251
Score = 104 bits (114), Expect = 5e-20
Identities = 118/157 (75%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 72 TTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGG 131
||| || | |||||||||| || | |||||| ||||| ||| ||| || | |||
Sbjct 16164181 TTCTCTGAGAAAAGAAGTTCACGAACCGTAGG-CCTTCTACCTCCACAAGACATTGCTCT 16164123
Query 132 TTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACC 191
|||| || ||| |||||| || ||||| |||| || |||||||||||||||||| |
Sbjct 16164122 GTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCT 16164063
Query 192 GTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|||||| ||| ||| ||||| || | ||||||| ||
Sbjct 16164062 GTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGA 16164026
Score = 77.0 bits (84), Expect = 7e-12
Identities = 107/148 (72%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 78 TATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGA 137
|| |||||||||| || | || | |||||||| ||| ||| | | | ||| |||| |
Sbjct 13177680 TAGAAAAGAAGTTCACCACCCAT-GAACCTTCTACCTCCACACGGCATTGCTCCTTCAAA 13177738
Query 138 CTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197
| || |||||| || ||||| |||||||||| | ||||||||||| | | |||
Sbjct 13177739 TTTACGCCCATTGCGGAAAATTCCCCACTGCTGCCCC---TAGGAGTTTGGGCTGCATCT 13177795
Query 198 CAGTTCCAATGTGGGGGACCTTCCTCTC 225
|||| | |||| || || | |||||||
Sbjct 13177796 CAGTCCTAATGCGGTTGATCATCCTCTC 13177823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068785058176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |