Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1229 104 5e-20 >seq1229 Length=21133251 Score = 104 bits (114), Expect = 5e-20 Identities = 118/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 72 TTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGG 131 ||| || | |||||||||| || | |||||| ||||| ||| ||| || | ||| Sbjct 16164181 TTCTCTGAGAAAAGAAGTTCACGAACCGTAGG-CCTTCTACCTCCACAAGACATTGCTCT 16164123 Query 132 TTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACC 191 |||| || ||| |||||| || ||||| |||| || |||||||||||||||||| | Sbjct 16164122 GTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTTTGGGCT 16164063 Query 192 GTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 |||||| ||| ||| ||||| || | ||||||| || Sbjct 16164062 GTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGA 16164026 Score = 77.0 bits (84), Expect = 7e-12 Identities = 107/148 (72%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 78 TATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGA 137 || |||||||||| || | || | |||||||| ||| ||| | | | ||| |||| | Sbjct 13177680 TAGAAAAGAAGTTCACCACCCAT-GAACCTTCTACCTCCACACGGCATTGCTCCTTCAAA 13177738 Query 138 CTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197 | || |||||| || ||||| |||||||||| | ||||||||||| | | ||| Sbjct 13177739 TTTACGCCCATTGCGGAAAATTCCCCACTGCTGCCCC---TAGGAGTTTGGGCTGCATCT 13177795 Query 198 CAGTTCCAATGTGGGGGACCTTCCTCTC 225 |||| | |||| || || | ||||||| Sbjct 13177796 CAGTCCTAATGCGGTTGATCATCCTCTC 13177823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068785058176