Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1229 143 2e-29 seq1030 104 2e-17 >seq1229 Length=21133251 Score = 143 bits (158), Expect = 2e-29 Identities = 382/577 (66%), Gaps = 9/577 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| ||| || ||| |||||||| || || |||||||| || | Sbjct 20050552 TGTTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTT 20050611 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||||| |||||||||||| |||| | ||||| | ||||| || | || Sbjct 20050612 GGACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAGTGGGAATCCCTAACCGCCG 20050671 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || |||| ||||| | || ||| | || ||||| ||||| ||||| || |||||| Sbjct 20050672 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCC 20050731 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 || || | | | ||| | | || || ||||| || ||||||||| |||| Sbjct 20050732 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 20050791 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||||||||| || ||||| ||||| ||||||| || |||||| | || | || | Sbjct 20050792 ACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAA 20050851 Query 61364 CGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 ||||||| | | | | || || | | || || || ||| | || ||| | ||| Sbjct 20050852 CGTACATAAAAAACTCCGACGAAAAGAG-CCGCTTATTTCGCGCCTTTGAAACGGTGCCG 20050910 Query 61423 -GCGGTGAAGCGGAAA-GCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 ||| || | ||| || ||||||||| | ||||||||| | | ||| |||| Sbjct 20050911 TGCGTTG--CCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGG---CTCGGAGACAT 20050965 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 | | || || || | || ||||| || || || |||| ||| || || Sbjct 20050966 TCGCGGAGAGACTGATAGCGTTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCT 20051025 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 ||| || ||||||||||| || || || | ||||| || || |||||| || ||| Sbjct 20051026 GCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGC 20051085 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | || || || || || || | || || ||||| || Sbjct 20051086 TAATCTCGCGAGATGAAGGACTCCACTGCGATTTCGC 20051122 >seq1030 Length=25649276 Score = 104 bits (114), Expect = 2e-17 Identities = 379/581 (65%), Gaps = 17/581 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| | |||||| |||||||| || || ||||| || || | Sbjct 1351543 TGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 1351602 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||| || ||| | || |||| | |||||||| || | || Sbjct 1351603 GGACTGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAAC---CG 1351659 Query 61184 GTGA--ACAA-CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 ||| | || || ||| | | || ||| | || ||||| || || || ||||| |||| Sbjct 1351660 CTGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG 1351719 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 || ||||| | | | | ||| | |||||| || || | ||||| || | Sbjct 1351720 TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCT 1351779 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 ||||||||||||| || ||||| ||||| ||||||| || |||||| | || | | Sbjct 1351780 TCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAG 1351839 Query 61361 ATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGAC-GAT 61418 | || ||||||| || | | || || | | || | || | ||||||||||| | | Sbjct 1351840 AAACTTACATCAAAGACTCCGACGAAAAG-AACCGTCTCTTTCACGCCATCGAGACGGTT 1351898 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478 || ||| | | |||||| ||||| || ||||||||| | | ||| || Sbjct 1351899 CCCTGCGTCGCA-AAGAAAGCCACGTGGGCGTTAAATTGGATCGACGG---CTCGGAGAC 1351954 Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG--TGTATTTTTCAGTGGATCG 61536 || | || |||| | || ||||| || ||||| | | || |||| ||| Sbjct 1351955 TTTCGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAG-GGAGTT 1352013 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 |||| ||| || |||||| | || || || || | ||||| || | || ||| || Sbjct 1352014 TTTG-CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAAC 1352072 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 |||||||| || || || ||||| | || || ||||| || Sbjct 1352073 GAGTTGATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGC 1352113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561226186720