Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq1282 145 8e-33 seq1346 138 1e-30 seq454 132 5e-29 >seq1282 Length=4878 Score = 145 bits (160), Expect = 8e-33 Identities = 152/195 (78%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 || |||||||||||| |||||| ||||||||||| |||| ||||||| | || ||| Sbjct 1323 TAACTGAAGCTTAGAGACTTTTCCTGGAAGCATGGTATCAGCCACTTCAC--TGTACAAG 1380 Query 62 -ATAACTCGTCATCAGCTCCCGGCCTT-AGAATCCCGGATTTACCTAAGATTCCAGCCTA 119 | | || | ||||| || | || | || | ||||||||| |||||||| | ||||| Sbjct 1381 TACAGCTTGCTATCAGTTCTCAGCATAGAGTACCCCGGATTTGCCTAAGATACATGCCTA 1440 Query 120 CCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGC 179 | ||||| || |||||||||||||||| |||| | || |||||||||||| |||||| Sbjct 1441 CAACCTTCCACCTGGACAACCAACGCCAGGCTGACTTAACCTTCTCCGTCCTCTCATCGC 1500 Query 180 ATTA-ACCAGAAGTA 193 |||| | |||||||| Sbjct 1501 ATTACAACAGAAGTA 1515 >seq1346 Length=3789 Score = 138 bits (152), Expect = 1e-30 Identities = 150/194 (77%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 || |||||||||||| |||||| ||||||||||| |||| ||||||| | || ||| Sbjct 3655 TAACTGAAGCTTAGAGACTTTTCCTGGAAGCATGGTATCAGCCACTTCAC--TGTACAAG 3598 Query 62 -ATAACTCGTCATCAGCTCCCGGCCTT-AGAATCCCGGATTTACCTAAGATTCCAGCCTA 119 | | || | ||||| || | || | || | ||||||||| |||||||| | ||||| Sbjct 3597 TACAGCTTGCTATCAGTTCTCAGCATAGAGTACCCCGGATTTGCCTAAGATACATGCCTA 3538 Query 120 CCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGC 179 | || || || |||||||||||||||| |||| | || |||||||||||| |||||| Sbjct 3537 CAAC-TTCCACCTGGACAACCAACGCCAGGCTGACTTAACCTTCTCCGTCCTCTCATCGC 3479 Query 180 ATTAACCAGAAGTA 193 |||| |||||||| Sbjct 3478 ATTACACAGAAGTA 3465 >seq454 Length=1291 Score = 132 bits (146), Expect = 5e-29 Identities = 148/194 (76%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 2 TACCTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAG 61 || |||||||||||| |||||| ||||||||||| |||| ||||||| | || ||| Sbjct 819 TAACTGAAGCTTAGAGACTTTTCCTGGAAGCATGGTATCAGCCACTTCAC--TGTACAAG 876 Query 62 -ATAACTCGTCATCAGCTCCCGGCCTT-AGAATCCCGGATTTACCTAAGATTCCAGCCTA 119 | | || | ||| ||| | || | || | ||||||||| |||||||| | ||||| Sbjct 877 TACAGCTTGCTATCGACTCTCAGCATAGAGCACCCCGGATTTGCCTAAGATGCATGCCTA 936 Query 120 CCACCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGC 179 | ||| || |||||||||||||||| |||| | || |||||||||||| |||||| Sbjct 937 CGGTCTTCCACCTGGACAACCAACGCCAGGCTGACTTAACCTTCTCCGTCCTCTCATCGC 996 Query 180 ATTAACCAGAAGTA 193 |||| |||||||| Sbjct 997 ATTACACAGAAGTA 1010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518392446912