Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1346 98.7 9e-19 seq1282 87.8 2e-15 >seq1346 Length=3789 Score = 98.7 bits (108), Expect = 9e-19 Identities = 137/183 (75%), Gaps = 13/183 (7%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| ||| ||||||||| |||||||||||| |||| Sbjct 2120 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGAAAAGCTCCGGG 2179 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATT--GG 124 || |||| ||| |||||||| |||| || |||||||| ||||| | | || | Sbjct 2180 GAGGCGGCAAATATCCTTTGATCCGGAGATTTCTGAATGGGGAAACCC-ACCTGTTAAGC 2238 Query 125 AGATA---TATCAT-AACGC-TAGGCGT--TAGGCGAACGTGGGGAACTGAAACATCTAA 177 || || ||| || || | ||| | | |||||||| |||||| |||||||||| | Sbjct 2239 AGGTATCGTATGATGAATACATAGTCATACGAGGCGAAC--GGGGAAGTGAAACATCTCA 2296 Query 178 GTA 180 ||| Sbjct 2297 GTA 2299 >seq1282 Length=4878 Score = 87.8 bits (96), Expect = 2e-15 Identities = 134/181 (74%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| ||| ||||| ||| ||||| |||||| |||| Sbjct 2861 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTAATAGCCTGCG-AAAGCTCCGGG 2803 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-GATATAT-TGG 124 || |||| ||| |||||||| |||| || |||||||| ||||| | ||| | Sbjct 2802 GAGGCGGCAAATA-TCCTTGATCCGGAGATTTCTGAATGGGGAAACCCACCTGTATAAGC 2744 Query 125 AGATA---TATCAT-AACGC-TAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGT 179 || || ||| || || | ||| ||||||||| |||||| |||||||||| ||| Sbjct 2743 AGGTATCGTATGATGAATACATAGTTACGAGGCGAACGAGGGGAAGTGAAACATCTCAGT 2684 Query 180 A 180 | Sbjct 2683 A 2683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476793053024