Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20maxima_20[genbank_20GCA_5F002006925.1_202017-03-07] 1,504 sequences; 345,757,338 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq7 113 4e-20 >seq1 Length=32082701 Score = 134 bits (148), Expect = 1e-26 Identities = 380/577 (66%), Gaps = 9/577 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| |||| ||| || ||| |||||||| || || |||||||| || | Sbjct 31016108 TGTTTCCAATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTT 31016167 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||||| ||||||||| || |||| | ||||| | ||||| || || || Sbjct 31016168 GGACGGCGGAGGAGGTTGACCTGTCGCAGGACATCCGCCAGTGGGAATCCCTAACGGCCG 31016227 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || |||| ||||| | || ||| | || ||||| ||||| ||||| || |||||| Sbjct 31016228 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCC 31016287 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 || || | | | ||| | | || | ||||| || ||||||||| |||| Sbjct 31016288 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAATCCAAGTCTCCGAGGCGCGTGCCTTCT 31016347 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||||||||| || ||||| ||||| ||||||| || |||||| | || | || | Sbjct 31016348 ACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAA 31016407 Query 61364 CGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 ||||||| | | | | || || | | || || || ||| | || || | ||| Sbjct 31016408 CGTACATAAAAAACTCCGACGAAAAGAG-CCGCTTATTTCGCGCCTTTGAAACTGTGCCG 31016466 Query 61423 -GCGGTGAAGCGGAAA-GCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 ||| || | ||| || ||||||||| | ||||||||| | | ||| |||| Sbjct 31016467 TGCGTTG--CCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGG---CTCGGAGACAT 31016521 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 | | || || || | || ||||| || || || |||| ||| || || Sbjct 31016522 TCGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCT 31016581 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 ||| || ||||||||||| || || || | ||||| || || |||||| || ||| Sbjct 31016582 GCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGC 31016641 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | || || || || || || | || || ||||| || Sbjct 31016642 TAATCTCGCGAGATGAAGGACTCCACTGCGATTTCGC 31016678 >seq7 Length=22269817 Score = 113 bits (124), Expect = 4e-20 Identities = 381/581 (66%), Gaps = 17/581 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| | |||||| |||||||| || || ||||| || || | Sbjct 8165728 TGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 8165669 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||| || ||| | || |||| | |||||||| || | || Sbjct 8165668 GGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCACTGGGAGGCCCTAAC---CG 8165612 Query 61184 GTGA--ACAA-CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 ||| | || || ||| | | || ||| | || ||||| || || || ||||| |||| Sbjct 8165611 CTGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCG 8165552 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 || ||||| | | | | ||| | |||||| || || | ||||||||| | Sbjct 8165551 TCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCT 8165492 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 ||||||||||||| || ||||| ||||| ||||||| || |||||| | || | | Sbjct 8165491 TCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAG 8165432 Query 61361 ATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGAC-GAT 61418 | || ||||||| || | | || || | | || | || | ||||||||||| | | Sbjct 8165431 AAACTTACATCAAAGACTCCGACGAAAAG-AACCGTCTCTTTCACGCCATCGAGACGGTT 8165373 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478 || ||| | | |||||| ||||| || ||||||||| | | ||| || Sbjct 8165372 CCCTGCGTCGCA-AAGAAAGCCACGTGGGCGTTAAATTGGATCGACGG---CTCGGAGAC 8165317 Query 61479 ATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG--TGTATTTTTCAGTGGATCG 61536 || | || |||| | || ||||| || ||||| | | || |||| ||| Sbjct 8165316 TTTCGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAG-GGAGTT 8165258 Query 61537 TTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAAT 61596 |||| ||| || |||||| | || || || || | ||||| || | || ||| || Sbjct 8165257 TTTG-CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAAC 8165199 Query 61597 GAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 |||||||| || || || ||||| | || || ||||| || Sbjct 8165198 GAGTTGATCTCTCGAGATGAGGGTCTCCACTGCGATTTCGC 8165158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560712578560