Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq31224 96.9 4e-18 seq26183 96.9 4e-18 seq10864 93.3 4e-17 seq6699 93.3 4e-17 seq28878 87.8 2e-15 seq27274 87.8 2e-15 seq32334 86.0 7e-15 seq28833 86.0 7e-15 seq23344 86.0 7e-15 seq11474 84.2 2e-14 seq25532 80.6 3e-13 seq672 80.6 3e-13 seq1917 75.2 1e-11 >seq31224 Length=89923 Score = 96.9 bits (106), Expect = 4e-18 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || |||||| Sbjct 23363 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAATGG 23422 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 23423 --GGTCGCAGTGACTAGCCCCGGGCGACTGTTTACCAAAAACACAGGTCT 23470 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 48376 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 48433 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 48434 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 48483 >seq26183 Length=286087 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 246915 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 246973 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | |||||||||||||||| || | || ||| | || ||| || || Sbjct 246974 GAACTCGGCAAAATAGCCCTGTAACTTCGGGAGAAGGTGTGCCTCCTCACAAA--GGGGG 247031 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | ||| || ||| || |||||||||||| |||||||||||| || Sbjct 247032 TCCCAGTGACCAGGCCCGGGCAACTGTTTACCAAAAACACAGGTCT 247077 >seq10864 Length=17974 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 5979 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 6036 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 6037 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 6086 >seq6699 Length=24755 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 3719 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 3662 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 3661 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 3612 >seq28878 Length=163380 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 || |||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 9515 TATGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAATGGGTGCCTCCTCACAAA--G 9458 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 9457 GGGGTCGCAGTGACAAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 9408 >seq27274 Length=221448 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| ||||||||||| || |||| ||| | || ||| | Sbjct 13206 TAAGGAACTCGGCAAAATAGCCCCATAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 13263 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 13264 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 13313 >seq32334 Length=72440 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 61261 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 61202 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 61201 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 61162 >seq28833 Length=164047 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 16628 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 16687 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 16688 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 16727 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 23035 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 23094 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 23095 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 23134 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 160091 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 160032 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 160031 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 159992 >seq23344 Length=366299 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 172016 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 172075 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 172076 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 172115 Score = 77.0 bits (84), Expect = 3e-12 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||| | || | || || ||||||| |||||||||| ||| || | ||| Sbjct 214365 CAAACCGACATAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 214306 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| | |||| |||||||||||| || |||| Sbjct 214305 GAACTCGGCAAAATAACCCCGTAACTTCGGGAGAAGGGGT 214266 >seq11474 Length=454 Score = 84.2 bits (92), Expect = 2e-14 Identities = 115/160 (72%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 44 GGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCT 103 ||| || ||||| |||||||||||| ||| | | | |||||||| ||||| || | | Sbjct 1 GGTAGAGTATACCAAGGCGCTTGAGAGAACTATGCTGAAGGAACTCGGCAATTTGCCTCC 60 Query 104 GTAACTTCGGGATAAAGGGTCC------CTACCCAGAAATGGGAG-GGCGCAGAGAATAG 156 ||||||||||||||| | | || ||| || | || || || ||| ||| || Sbjct 61 GTAACTTCGGGATAAGGAGGCCTCTGTTTTACGCAAGTAGGGCAGAGGGGCACAGACCAG 120 Query 157 GTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||| |||||||| | ||||||||||||| ||| || Sbjct 121 GGGGTGGCGACTGTTTATCTAAAACACAGGGCTCTGCGAA 160 >seq25532 Length=6063 Score = 80.6 bits (88), Expect = 3e-13 Identities = 83/108 (77%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| | ||| ||||||||| || || |||| | | | || ||| ||| Sbjct 5410 AGGAACTCGGCAAAATAGCCCCGTAACTTCGAGAAAAGGGGTGCGTCCTCACAAAGGGG- 5352 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 5351 -GTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 5305 >seq672 Length=671749 Score = 80.6 bits (88), Expect = 3e-13 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| | |||||||||||| ||| || |||| || | || ||| || Sbjct 465765 AGGAACTTGGCAAAATAGCCCTGTAACTTCAGGAGAAGGGGTGTCTCCTCACAAAAGG-- 465708 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184 || | ||| || ||| || |||||||||||| |||||||||| Sbjct 465707 GGCCACAGTGACCAGGCCCGGGCAACTGTTTACCAAAAACACA 465665 >seq1917 Length=46836 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 |||| |||| |||||| | || |||||||||||| || |||| ||| | || ||| | Sbjct 9796 TAAGTAACTCGGCAAAATAGCCACGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 9739 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| | ||| || ||| |||||||| ||||||||||| || Sbjct 9738 GGGGTCGCAGTAACCAGGCCCGGGCGACTGTTTACTAAAAACACAGGTCT 9689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531031566274